Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060146.seq
         (511 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    29   0.024
AM712904-1|CAN84643.1|   86|Tribolium castaneum hypothetical pro...    22   2.8  
AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger tran...    22   2.8  
AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.     21   4.8  
EF592538-1|ABQ95984.1|  582|Tribolium castaneum beta-N-acetylglu...    21   6.4  
AY321476-1|AAQ23386.1|  253|Tribolium castaneum Ash protein.           21   6.4  
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    21   8.4  
AJ829922-1|CAH25640.1|  193|Tribolium castaneum twist bHLH trans...    21   8.4  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           21   8.4  

>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 29.1 bits (62), Expect = 0.024
 Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 5/61 (8%)
 Frame = +2

Query: 248 GLESKAQLPTKRRRCSPFAASPSTSPGVK-----TSESKPSSFGESVSAPXXITPERLAQ 412
           G+  ++  P  +   +P ++S  TSP        TS   P+S   + SAP  I  +R A 
Sbjct: 5   GIYEESPPPAPQSAATPISSSGMTSPAAAPPPATTSSGSPASVASNASAPLHIPAKRAAY 64

Query: 413 E 415
           +
Sbjct: 65  D 65


>AM712904-1|CAN84643.1|   86|Tribolium castaneum hypothetical
           protein protein.
          Length = 86

 Score = 22.2 bits (45), Expect = 2.8
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = +1

Query: 55  LKHRTLL*LENEXYIFFVYYLYGA*Y 132
           +KH   L L N+  I F YY Y A Y
Sbjct: 46  VKHFHPLALSNKNAIDFNYYYYAATY 71


>AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger
           transcription factor protein.
          Length = 228

 Score = 22.2 bits (45), Expect = 2.8
 Identities = 14/37 (37%), Positives = 17/37 (45%)
 Frame = +2

Query: 212 KENGXCYIKKKSGLESKAQLPTKRRRCSPFAASPSTS 322
           K NG C I KK+    KA    + R+C     S S S
Sbjct: 43  KNNGECVINKKNRTACKA---CRLRKCLLVGMSKSGS 76


>AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund
          protein.
          Length = 301

 Score = 21.4 bits (43), Expect = 4.8
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +1

Query: 1  GTRLLQPGKRRCKII 45
          G   +QPG  RCK++
Sbjct: 5  GLGAIQPGVNRCKLL 19


>EF592538-1|ABQ95984.1|  582|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG3 protein.
          Length = 582

 Score = 21.0 bits (42), Expect = 6.4
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -3

Query: 224 RHFLFTPNEILWF 186
           RH L T N+++WF
Sbjct: 183 RHGLETLNQLIWF 195


>AY321476-1|AAQ23386.1|  253|Tribolium castaneum Ash protein.
          Length = 253

 Score = 21.0 bits (42), Expect = 6.4
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +2

Query: 269 LPTKRRRCSPFAASPSTSPGVKTSESKPSSFGESV 373
           LPT    CS  ++SP+ S   ++S S  SS+  ++
Sbjct: 191 LPTPT--CSEASSSPTPSHSSESSFSAASSYTNTI 223


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 20.6 bits (41), Expect = 8.4
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -1

Query: 160 NXEYKKMKNNIKPHTGNTRKK 98
           N   K  K+N  P+T N R+K
Sbjct: 283 NRRMKWKKDNKLPNTKNVRRK 303


>AJ829922-1|CAH25640.1|  193|Tribolium castaneum twist bHLH
           transcription factor protein.
          Length = 193

 Score = 20.6 bits (41), Expect = 8.4
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = -2

Query: 222 PFSFYAQRNPLVYVYVNEFV 163
           PF +Y +  PL Y    +FV
Sbjct: 23  PFGYYHEEPPLFYEERPDFV 42


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 20.6 bits (41), Expect = 8.4
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -1

Query: 160 NXEYKKMKNNIKPHTGNTRKK 98
           N   K  K+N  P+T N R+K
Sbjct: 283 NRRMKWKKDNKLPNTKNVRRK 303


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 117,525
Number of Sequences: 336
Number of extensions: 2372
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12154132
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)