Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060146.seq
         (511 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC651.12c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    26   2.9  
SPCC645.03c |isa1||iron-sulfur protein Isa1|Schizosaccharomyces ...    26   3.8  
SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces...    25   6.6  
SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyce...    25   8.7  

>SPBC651.12c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 273

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 18/47 (38%), Positives = 22/47 (46%), Gaps = 4/47 (8%)
 Frame = +2

Query: 335 TSESKPSSFGESVSAPXXITPERLAQETYD----EIKRLHRRGQLRL 463
           T  SKPS    SVS+P     + L Q T D     I R+HR  +  L
Sbjct: 160 TPPSKPSFLSSSVSSPASSKQKSLFQCTKDLEKRYINRVHRSSETEL 206


>SPCC645.03c |isa1||iron-sulfur protein Isa1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 190

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 13/47 (27%), Positives = 22/47 (46%)
 Frame = +2

Query: 329 VKTSESKPSSFGESVSAPXXITPERLAQETYDEIKRLHRRGQLRLAH 469
           V+T   KPS+ G   +AP  +T   +A   +   K + +   L + H
Sbjct: 46  VETPSLKPSAAGSGSTAPKPVTEREIASTRFMPRKNVIKLTPLAVEH 92


>SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 632

 Score = 25.0 bits (52), Expect = 6.6
 Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 2/26 (7%)
 Frame = +2

Query: 254 ESKAQL--PTKRRRCSPFAASPSTSP 325
           E K++L  PT  R  +PF  SPS++P
Sbjct: 47  EGKSELVSPTLERLVAPFNCSPSSTP 72


>SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 964

 Score = 24.6 bits (51), Expect = 8.7
 Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
 Frame = +2

Query: 254 ESKAQLPTKRRRCSPFAAS----PSTSPGVKTSESKPSSFGESVS 376
           ESK Q+P K    + F+ S    PS  P   +S + PS   ES+S
Sbjct: 61  ESKIQIP-KSSSSTAFSPSNNNAPSPFPPKNSSLASPSKISESIS 104


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,036,768
Number of Sequences: 5004
Number of extensions: 38483
Number of successful extensions: 103
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 204242806
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)