Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060146.seq
(511 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0674 + 19788198-19789817 30 1.2
02_01_0138 + 999809-999821,1000456-1001341,1001424-1003221,10037... 29 2.9
01_03_0145 - 13116302-13116958,13117365-13117430,13117786-131180... 29 2.9
09_06_0053 - 20537433-20537833,20537910-20538456 28 3.8
01_07_0261 + 42369666-42369808,42369946-42370108,42370453-423705... 28 3.8
07_03_0923 - 22617627-22617860,22618486-22618542,22618612-226187... 28 5.0
05_03_0375 - 13244887-13244961,13245084-13245215,13247018-132471... 28 5.0
04_03_0037 - 9991176-9991268,9991403-9991474,9991569-9991928,999... 28 5.0
11_06_0326 - 22382001-22383248 27 8.8
07_03_1565 - 27760407-27760463,27760905-27761513 27 8.8
03_02_0603 - 9786761-9786856,9787189-9787269,9787366-9787431,978... 27 8.8
>10_08_0674 + 19788198-19789817
Length = 539
Score = 29.9 bits (64), Expect = 1.2
Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 8/61 (13%)
Frame = -1
Query: 454 LSTSMQSFNLIISLLCQAFXGNXXRCTNGFSK*R--------WFRFXXFYPRTCAWTCCK 299
L+++ + NL+I LL + R T GFS R W R +CA C +
Sbjct: 236 LASAWANLNLVIFLLAFVYVSGVHRDTGGFSLPRKMFKDVDGWVRLVRLAAESCASVCLE 295
Query: 298 W 296
W
Sbjct: 296 W 296
>02_01_0138 +
999809-999821,1000456-1001341,1001424-1003221,
1003716-1003805,1004034-1004111,1004513-1004518,
1004849-1004958,1005174-1005369
Length = 1058
Score = 28.7 bits (61), Expect = 2.9
Identities = 10/40 (25%), Positives = 23/40 (57%)
Frame = +3
Query: 381 LXKLPXNAWHKRLMMRLNDCIDVDSCGWPTGSAASCSIIK 500
L ++P + H + + +++C D++ CG G A S+++
Sbjct: 563 LLQIPCSLLHSLMWLSISECPDLEFCGGSGGFAGFTSLVQ 602
>01_03_0145 -
13116302-13116958,13117365-13117430,13117786-13118065,
13118283-13119028
Length = 582
Score = 28.7 bits (61), Expect = 2.9
Identities = 21/84 (25%), Positives = 36/84 (42%), Gaps = 7/84 (8%)
Frame = +2
Query: 203 WA*KENGXCYIKKKSGLESKAQLPTKRRRC-------SPFAASPSTSPGVKTSESKPSSF 361
WA ++N + + KS + ++P K R SP ++SP+ SP S P+
Sbjct: 253 WAKRKNDKAHWRAKSRSDPSREIPAKGRELIIFGNNQSPSSSSPALSPYSPNFPSSPNPI 312
Query: 362 GESVSAPXXITPERLAQETYDEIK 433
V E +A T +E++
Sbjct: 313 SPQV-VSLIAWAESMANHTDEELR 335
>09_06_0053 - 20537433-20537833,20537910-20538456
Length = 315
Score = 28.3 bits (60), Expect = 3.8
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +2
Query: 272 PTKRRRCSPFAASPSTSPGVKTSESKPSSFGESVSA 379
PTKR R P A +P+TS G + + F VS+
Sbjct: 165 PTKRPRARPSATTPTTSSGDQQMVTVAERFPREVSS 200
>01_07_0261 +
42369666-42369808,42369946-42370108,42370453-42370585,
42370923-42371093,42371211-42371289,42371620-42371686,
42372231-42372330,42372643-42372719,42373201-42373293,
42373391-42373564
Length = 399
Score = 28.3 bits (60), Expect = 3.8
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Frame = +2
Query: 254 ESKAQLPTKRRRCSP-FAASPSTSPGVKTSESKPSSFGESVSAPXXITPERLAQ 412
+ ++ PT RR P +A+ P K S SKP+S ++ S + RLA+
Sbjct: 8 QPRSHQPTSLRRAPPPSSAAAKPEPNEKASNSKPASPVQAPSPERTVKKLRLAK 61
>07_03_0923 -
22617627-22617860,22618486-22618542,22618612-22618768,
22618875-22619014,22619642-22619777,22619874-22620142,
22620272-22620492,22620648-22620707,22620859-22620915,
22621008-22621405,22621929-22622000,22622098-22622169,
22622246-22622317,22622574-22622645,22622738-22622867,
22623065-22623170
Length = 750
Score = 27.9 bits (59), Expect = 5.0
Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 4/65 (6%)
Frame = +2
Query: 302 AASPSTSPGVK--TSESKPSSFGESVSAPXXITPE--RLAQETYDEIKRLHRRGQLRLAH 469
A S P ++ SE S F + +S+ PE E ++ R+H +G L +AH
Sbjct: 624 AISKMVDPSIRGQCSEKALSRFVDIISSCIQHEPEFRPSMSEVVQDLTRMHEKGLLCIAH 683
Query: 470 GLCCI 484
+C +
Sbjct: 684 LICSV 688
>05_03_0375 -
13244887-13244961,13245084-13245215,13247018-13247110,
13247196-13247355,13247471-13247580,13248259-13248314,
13249115-13249880
Length = 463
Score = 27.9 bits (59), Expect = 5.0
Identities = 25/78 (32%), Positives = 31/78 (39%), Gaps = 7/78 (8%)
Frame = +2
Query: 251 LESKAQLPTKRRRCSPFAASPSTSPGVKTSESKPSSFGESVSAPXXITPERL-------A 409
L S+ QLP R S A + GV S +P SV A + R
Sbjct: 24 LLSRYQLPRAHRAASTVAFAARRFRGVNPSSDRPRGRRASVPAAPTTSAARDDGGGGGGI 83
Query: 410 QETYDEIKRLHRRGQLRL 463
E+ RLHRR +LRL
Sbjct: 84 DALEAELWRLHRRAELRL 101
>04_03_0037 -
9991176-9991268,9991403-9991474,9991569-9991928,
9992466-9992555,9992692-9992782,9993530-9993729,
9998024-9998101,9998196-9998312,10000017-10000112,
10000192-10000317,10000533-10000629,10000979-10001023,
10002106-10002179,10002267-10002350,10002439-10002522,
10002660-10002851,10003775-10003903,10004061-10004093,
10004190-10004286,10004833-10004883,10005211-10005289,
10005480-10005552,10005595-10005691,10006392-10006473,
10008345-10008691,10010271-10010535,10010624-10010743,
10010971-10011358
Length = 1219
Score = 27.9 bits (59), Expect = 5.0
Identities = 11/37 (29%), Positives = 15/37 (40%)
Frame = +3
Query: 399 NAWHKRLMMRLNDCIDVDSCGWPTGSAASCSIIKWIP 509
N W R + N C D+ C G++ KW P
Sbjct: 273 NRWRGRGALTPNACCDISGCDKAVGASGDLIFRKWNP 309
>11_06_0326 - 22382001-22383248
Length = 415
Score = 27.1 bits (57), Expect = 8.8
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +2
Query: 251 LESKAQLPTKRRRCSPFAASPSTSPGVKTSESKPSS 358
+E K + P ++RR SP + PG + S PSS
Sbjct: 1 MEKKKEKPNRKRRKPRQDPSPDSGPGPDSDCSPPSS 36
>07_03_1565 - 27760407-27760463,27760905-27761513
Length = 221
Score = 27.1 bits (57), Expect = 8.8
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +2
Query: 362 GESVSAPXXITPERLAQETYDEIKRLHRRGQLR 460
G + S P + RL DE+K+LH GQLR
Sbjct: 118 GRAFSLPQLLVGGRLVGGA-DEVKQLHESGQLR 149
>03_02_0603 -
9786761-9786856,9787189-9787269,9787366-9787431,
9788056-9788610,9788693-9788857,9789110-9789217,
9789905-9790109,9790347-9790434,9791590-9792109
Length = 627
Score = 27.1 bits (57), Expect = 8.8
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = +2
Query: 401 RLAQETYDEIKRLHRRGQLRL 463
+LAQE Y+EIK+ + G L+L
Sbjct: 332 KLAQEIYEEIKKKEQNGLLKL 352
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,993,821
Number of Sequences: 37544
Number of extensions: 233630
Number of successful extensions: 713
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 698
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 712
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1095026320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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