Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060146.seq
         (511 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_9857| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   0.96 
SB_50769| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.9  
SB_27157| Best HMM Match : CLPTM1 (HMM E-Value=0)                      27   9.0  
SB_59417| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.0  

>SB_9857| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1125

 Score = 30.3 bits (65), Expect = 0.96
 Identities = 24/70 (34%), Positives = 33/70 (47%)
 Frame = +2

Query: 251 LESKAQLPTKRRRCSPFAASPSTSPGVKTSESKPSSFGESVSAPXXITPERLAQETYDEI 430
           L  + Q   KRRRC P A S S S    +S +  S F   +      + E+L+   + E 
Sbjct: 170 LSPQHQPSPKRRRCIPMATSSSPS----SSSNTDSPF---LEITPRYSQEQLSTNLHMEW 222

Query: 431 KRLHRRGQLR 460
           KRL RR  L+
Sbjct: 223 KRLQRRKHLK 232


>SB_50769| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 334

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 22/69 (31%), Positives = 34/69 (49%)
 Frame = +2

Query: 305 ASPSTSPGVKTSESKPSSFGESVSAPXXITPERLAQETYDEIKRLHRRGQLRLAHGLCCI 484
           A+P T+PG  TS +  +  G + +A   I P+  A E   E  + H R  LR  HG+  +
Sbjct: 123 AAPQTTPGGATSAASATPNGNAPTASPTI-PKSGADE---EALKAHNR--LRKVHGVPAM 176

Query: 485 MLHHQVDSK 511
            L  ++  K
Sbjct: 177 TLDKELSKK 185


>SB_27157| Best HMM Match : CLPTM1 (HMM E-Value=0)
          Length = 1264

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 14/47 (29%), Positives = 23/47 (48%)
 Frame = +2

Query: 242  KSGLESKAQLPTKRRRCSPFAASPSTSPGVKTSESKPSSFGESVSAP 382
            +SG  ++A   +   +   +A   +T P V TS SKP+S+      P
Sbjct: 894  RSGSSNQATAQSSPGKVYSWANPTATKPKVLTSASKPTSYATKTVPP 940


>SB_59417| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1822

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 16/75 (21%), Positives = 30/75 (40%), Gaps = 1/75 (1%)
 Frame = +2

Query: 212  KENGXCYIKKKSGLESKAQLPTKRRRCSPFAASPSTSPGVKTSESKPSSFGES-VSAPXX 388
            + +G C+    +G E      T    C    +SP T P  +  E +    G + V+ P  
Sbjct: 1223 RSSGPCWCADDTGREINGTRTTGTVTCPGNGSSPRTDPVTRCQEHRERVLGPTGVADPGS 1282

Query: 389  ITPERLAQETYDEIK 433
              P      +Y++++
Sbjct: 1283 YVPVCRDDGSYEDVQ 1297


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,063,385
Number of Sequences: 59808
Number of extensions: 275827
Number of successful extensions: 767
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 655
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 762
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1123894172
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)