Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060146.seq
(511 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U50193-3|AAP68918.1| 1189|Caenorhabditis elegans Nuclear pore co... 29 2.6
Z73426-5|CAO78745.1| 1607|Caenorhabditis elegans Hypothetical pr... 28 3.4
Z73426-4|CAA97793.3| 1593|Caenorhabditis elegans Hypothetical pr... 28 3.4
AL132943-5|CAB81977.1| 367|Caenorhabditis elegans Hypothetical ... 28 3.4
AC024791-2|AAK95891.1| 604|Caenorhabditis elegans Temporarily a... 28 3.4
Z74039-7|CAA98506.1| 290|Caenorhabditis elegans Hypothetical pr... 28 4.5
U39849-2|AAN63462.2| 370|Caenorhabditis elegans Hypothetical pr... 27 7.9
AY255668-1|AAQ96605.1| 167|Caenorhabditis elegans MiRP5 protein. 27 7.9
AF098994-1|AAC67472.2| 167|Caenorhabditis elegans Hypothetical ... 27 7.9
>U50193-3|AAP68918.1| 1189|Caenorhabditis elegans Nuclear pore complex
protein protein10, isoform b protein.
Length = 1189
Score = 28.7 bits (61), Expect = 2.6
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = -2
Query: 327 PGLVLGLAANGEHLLLFVGNCALDSNP-DFFLM*H 226
PG ++ LA +H + V +CA NP D+FL H
Sbjct: 901 PGELIKLACESQHSVEVVLDCAAGENPNDYFLQWH 935
>Z73426-5|CAO78745.1| 1607|Caenorhabditis elegans Hypothetical protein
F40F11.2b protein.
Length = 1607
Score = 28.3 bits (60), Expect = 3.4
Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 6/59 (10%)
Frame = +2
Query: 245 SGLESKAQLPTKR----RRCSPFAASPSTSPGVKTSESKPSSFGESVSA--PXXITPER 403
+G + K QL + R +PFA PS+ P ++ S S +VSA P TP R
Sbjct: 1370 AGKDKKGQLAKNKAAFCNRFNPFANVPSSKPSTSSAVSATPSTSSAVSAKLPTGKTPGR 1428
>Z73426-4|CAA97793.3| 1593|Caenorhabditis elegans Hypothetical protein
F40F11.2a protein.
Length = 1593
Score = 28.3 bits (60), Expect = 3.4
Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 6/59 (10%)
Frame = +2
Query: 245 SGLESKAQLPTKR----RRCSPFAASPSTSPGVKTSESKPSSFGESVSA--PXXITPER 403
+G + K QL + R +PFA PS+ P ++ S S +VSA P TP R
Sbjct: 1356 AGKDKKGQLAKNKAAFCNRFNPFANVPSSKPSTSSAVSATPSTSSAVSAKLPTGKTPGR 1414
>AL132943-5|CAB81977.1| 367|Caenorhabditis elegans Hypothetical
protein Y116F11B.8 protein.
Length = 367
Score = 28.3 bits (60), Expect = 3.4
Identities = 13/46 (28%), Positives = 21/46 (45%)
Frame = +2
Query: 293 SPFAASPSTSPGVKTSESKPSSFGESVSAPXXITPERLAQETYDEI 430
S AA PST P S + P+++ + + ++ E YD I
Sbjct: 285 SSLAADPSTDPSPSISSTDPTTYSSTTAEDYDEEDDKKGDEEYDLI 330
>AC024791-2|AAK95891.1| 604|Caenorhabditis elegans Temporarily
assigned gene nameprotein 63 protein.
Length = 604
Score = 28.3 bits (60), Expect = 3.4
Identities = 17/40 (42%), Positives = 25/40 (62%)
Frame = +2
Query: 284 RRCSPFAASPSTSPGVKTSESKPSSFGESVSAPXXITPER 403
RR SPF++S ST+P +K+ + S F ES+ +PER
Sbjct: 220 RRRSPFSSSKSTAP-IKSRHYR-SRFSESLEDNVFRSPER 257
>Z74039-7|CAA98506.1| 290|Caenorhabditis elegans Hypothetical
protein K03B8.7 protein.
Length = 290
Score = 27.9 bits (59), Expect = 4.5
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = -1
Query: 154 EYKKMKNNIKPHTGNTRKKYXIRFQVTVKSDVLN 53
E ++MKN I + N +K IRF ++SD +N
Sbjct: 110 EVQRMKNEIMEISTNKTRKSEIRFSPPIESDRVN 143
>U39849-2|AAN63462.2| 370|Caenorhabditis elegans Hypothetical
protein C06A8.8a protein.
Length = 370
Score = 27.1 bits (57), Expect = 7.9
Identities = 19/73 (26%), Positives = 28/73 (38%)
Frame = +2
Query: 233 IKKKSGLESKAQLPTKRRRCSPFAASPSTSPGVKTSESKPSSFGESVSAPXXITPERLAQ 412
++K+ + QLPT A S S S S SVS P +R +
Sbjct: 222 LRKREAVMKNPQLPTTSAITETIAIDTSCEKSAPVSSSSSSKQQSSVSPP---LSDRSKK 278
Query: 413 ETYDEIKRLHRRG 451
+ DEI + +G
Sbjct: 279 QILDEILGIDEKG 291
>AY255668-1|AAQ96605.1| 167|Caenorhabditis elegans MiRP5 protein.
Length = 167
Score = 27.1 bits (57), Expect = 7.9
Identities = 16/64 (25%), Positives = 28/64 (43%), Gaps = 2/64 (3%)
Frame = +2
Query: 239 KKSGLESKAQLPTKRRRCSPFAA--SPSTSPGVKTSESKPSSFGESVSAPXXITPERLAQ 412
+ L+SK T ++R SP +P +SP + PSS + P P+++
Sbjct: 68 RSKSLKSKQSAVTPKKRASPIPPQPAPPSSPKPTEESATPSSSFAPSTEPTPTVPDKVDD 127
Query: 413 ETYD 424
+ D
Sbjct: 128 GSED 131
>AF098994-1|AAC67472.2| 167|Caenorhabditis elegans Hypothetical
protein T06A4.2 protein.
Length = 167
Score = 27.1 bits (57), Expect = 7.9
Identities = 16/64 (25%), Positives = 28/64 (43%), Gaps = 2/64 (3%)
Frame = +2
Query: 239 KKSGLESKAQLPTKRRRCSPFAA--SPSTSPGVKTSESKPSSFGESVSAPXXITPERLAQ 412
+ L+SK T ++R SP +P +SP + PSS + P P+++
Sbjct: 68 RSKSLKSKQSAVTPKKRASPIPPQPAPPSSPKPTEESATPSSSFAPSTEPTPTVPDKVDD 127
Query: 413 ETYD 424
+ D
Sbjct: 128 GSED 131
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,340,147
Number of Sequences: 27780
Number of extensions: 219786
Number of successful extensions: 605
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 596
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 605
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 988489374
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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