Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060145.seq
(677 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 99 7e-22
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 51 1e-07
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 45 1e-05
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 39 6e-04
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 39 6e-04
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 38 0.002
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 37 0.002
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 37 0.002
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 37 0.003
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 36 0.004
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 35 0.009
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 35 0.009
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 35 0.009
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 34 0.022
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 33 0.038
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 33 0.038
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 33 0.038
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 32 0.066
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 32 0.088
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 31 0.15
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 30 0.27
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 29 0.47
SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|... 29 0.62
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 29 0.82
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|... 28 1.4
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 27 1.9
SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr 1... 27 1.9
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 26 5.8
SPAC17A5.07c |ulp2||SUMO deconjugating cysteine peptidase Ulp2 |... 25 7.6
SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|... 25 7.6
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 98.7 bits (235), Expect = 7e-22
Identities = 44/87 (50%), Positives = 56/87 (64%)
Frame = +3
Query: 255 WDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYV 434
W + +L PF K+FY H V RS EV EYR E+ V G+ V P+ FEEA FP+YV
Sbjct: 74 WKNETLIPFQKDFYKEHENVRNRSDAEVTEYRKEKEIVVHGLNVPKPVTTFEEAGFPNYV 133
Query: 435 QQGVKTMGYKEPTPIQAQGWPIAMSER 515
+ VK +G++ PTPIQ Q WP+AMS R
Sbjct: 134 LKEVKQLGFEAPTPIQQQAWPMAMSGR 160
Score = 57.2 bits (132), Expect = 2e-09
Identities = 25/41 (60%), Positives = 33/41 (80%)
Frame = +2
Query: 509 GKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGSRLL 631
G+++VG++ TGSGKTL+Y LPAIVHIN QP + GDG +L
Sbjct: 159 GRDMVGISATGSGKTLSYCLPAIVHINAQPLLSPGDGPIVL 199
Score = 33.9 bits (74), Expect = 0.022
Identities = 16/18 (88%), Positives = 16/18 (88%)
Frame = +1
Query: 622 PIALVLAPTRELAQQIQQ 675
PI LVLAPTRELA QIQQ
Sbjct: 196 PIVLVLAPTRELAVQIQQ 213
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 51.2 bits (117), Expect = 1e-07
Identities = 19/37 (51%), Positives = 31/37 (83%)
Frame = +2
Query: 509 GKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDG 619
G++++GVA+TGSGKT+A++LP HI +Q P++ G+G
Sbjct: 455 GRDVIGVAKTGSGKTIAFLLPMFRHIKDQRPLKTGEG 491
Score = 46.0 bits (104), Expect = 5e-06
Identities = 23/85 (27%), Positives = 43/85 (50%), Gaps = 1/85 (1%)
Frame = +3
Query: 264 VSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHE-VTVSGVEVHNPIQYFEEANFPDYVQQ 440
++ + F K+FY + SP EV+E R + + + + G++ P+ + +
Sbjct: 372 INYEDFKKDFYVEPEELKNLSPAEVDELRASLDGIKIRGIDCPKPVTSWSQCGLSAQTIS 431
Query: 441 GVKTMGYKEPTPIQAQGWPIAMSER 515
+ ++GY++PT IQAQ P S R
Sbjct: 432 VINSLGYEKPTSIQAQAIPAITSGR 456
Score = 27.9 bits (59), Expect = 1.4
Identities = 11/16 (68%), Positives = 14/16 (87%)
Frame = +1
Query: 622 PIALVLAPTRELAQQI 669
PIA+++ PTRELA QI
Sbjct: 492 PIAIIMTPTRELAVQI 507
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 44.8 bits (101), Expect = 1e-05
Identities = 17/31 (54%), Positives = 26/31 (83%)
Frame = +2
Query: 512 KNLVGVAQTGSGKTLAYILPAIVHINNQPPI 604
K+L+G+A+TGSGKT A+I+P I+ I+ PP+
Sbjct: 287 KDLIGIAETGSGKTAAFIIPLIIAISKLPPL 317
Score = 41.9 bits (94), Expect = 8e-05
Identities = 15/56 (26%), Positives = 34/56 (60%)
Frame = +3
Query: 348 RNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSER 515
+ ++ +++ G ++ NP++ +EEA P + + +K + YKEP+ IQ P+ + +
Sbjct: 232 KEDYNISIKGDDLPNPLRNWEEAGLPSEMLKVLKKVNYKEPSSIQRAAIPVLLQRK 287
Score = 33.1 bits (72), Expect = 0.038
Identities = 15/17 (88%), Positives = 16/17 (94%)
Frame = +1
Query: 622 PIALVLAPTRELAQQIQ 672
P A+VLAPTRELAQQIQ
Sbjct: 326 PYAVVLAPTRELAQQIQ 342
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 39.1 bits (87), Expect = 6e-04
Identities = 14/27 (51%), Positives = 25/27 (92%)
Frame = +2
Query: 509 GKNLVGVAQTGSGKTLAYILPAIVHIN 589
G+++VG+A+TGSGKT+A+ +PA+ ++N
Sbjct: 202 GRDVVGIAETGSGKTVAFGIPALQYLN 228
Score = 38.7 bits (86), Expect = 8e-04
Identities = 18/41 (43%), Positives = 26/41 (63%)
Frame = +3
Query: 393 PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSER 515
PI F+E + +++G+K YKEPTPIQA WP ++ R
Sbjct: 165 PILQFDELDVSAKLREGLKN--YKEPTPIQAATWPYLLAGR 203
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 39.1 bits (87), Expect = 6e-04
Identities = 14/28 (50%), Positives = 24/28 (85%)
Frame = +2
Query: 509 GKNLVGVAQTGSGKTLAYILPAIVHINN 592
G+++VG+A+TGSGKT A+++P I H+ +
Sbjct: 106 GRDVVGMARTGSGKTAAFVIPMIEHLKS 133
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 37.5 bits (83), Expect = 0.002
Identities = 15/29 (51%), Positives = 22/29 (75%)
Frame = +2
Query: 512 KNLVGVAQTGSGKTLAYILPAIVHINNQP 598
++++G+AQTGSGKT A+ LP I + N P
Sbjct: 84 RDVIGLAQTGSGKTAAFALPVIQELWNNP 112
Score = 32.3 bits (70), Expect = 0.066
Identities = 12/37 (32%), Positives = 23/37 (62%)
Frame = +3
Query: 405 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSER 515
F+E D + + + +G+K PTPIQ + P+ +++R
Sbjct: 48 FKELGVIDELCEACEKLGFKTPTPIQQEAIPVVLNKR 84
Score = 27.1 bits (57), Expect = 2.5
Identities = 12/16 (75%), Positives = 14/16 (87%)
Frame = +1
Query: 628 ALVLAPTRELAQQIQQ 675
A+VLAPTRELA QI +
Sbjct: 117 AVVLAPTRELAYQISE 132
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 37.1 bits (82), Expect = 0.002
Identities = 15/44 (34%), Positives = 26/44 (59%)
Frame = +2
Query: 446 KDNGLQRTDAYSSSRLADSYVGKNLVGVAQTGSGKTLAYILPAI 577
K+ G + + G++++G A+TGSGKTLA+++P I
Sbjct: 105 KEMGFETMTEIQKRSIPPLLAGRDVLGAAKTGSGKTLAFLIPTI 148
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 37.1 bits (82), Expect = 0.002
Identities = 18/51 (35%), Positives = 26/51 (50%)
Frame = +3
Query: 363 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSER 515
V VSG ++ P+ F ++ Q +K GY +PTP+Q PI S R
Sbjct: 158 VEVSGGDIE-PVNEFTSPPLNSHLLQNIKLSGYTQPTPVQKNSIPIVTSGR 207
Score = 30.3 bits (65), Expect = 0.27
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = +2
Query: 509 GKNLVGVAQTGSGKTLAYILPAI 577
G++L+ AQTGSGKT ++ P +
Sbjct: 206 GRDLMACAQTGSGKTAGFLFPIL 228
Score = 27.1 bits (57), Expect = 2.5
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = +1
Query: 601 YSER*WVPIALVLAPTRELAQQIQQ 675
Y R P L+LAPTREL QI +
Sbjct: 249 YRPRKAYPTTLILAPTRELVCQIHE 273
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 36.7 bits (81), Expect = 0.003
Identities = 14/26 (53%), Positives = 23/26 (88%)
Frame = +2
Query: 509 GKNLVGVAQTGSGKTLAYILPAIVHI 586
G++++G A+TGSGKTLA+I+P I ++
Sbjct: 76 GRDILGAAKTGSGKTLAFIVPLIENL 101
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 36.3 bits (80), Expect = 0.004
Identities = 15/31 (48%), Positives = 23/31 (74%)
Frame = +2
Query: 506 VGKNLVGVAQTGSGKTLAYILPAIVHINNQP 598
+GK++VG A TGSGKT A+I+P + + +P
Sbjct: 295 LGKDIVGAAVTGSGKTAAFIVPILERLLYRP 325
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 35.1 bits (77), Expect = 0.009
Identities = 16/32 (50%), Positives = 22/32 (68%)
Frame = +2
Query: 509 GKNLVGVAQTGSGKTLAYILPAIVHINNQPPI 604
GK+LV A+TGSGKT AY++P + + Q I
Sbjct: 51 GKDLVAQARTGSGKTAAYLIPILELLLKQKQI 82
Score = 26.6 bits (56), Expect = 3.3
Identities = 11/14 (78%), Positives = 13/14 (92%)
Frame = +1
Query: 628 ALVLAPTRELAQQI 669
AL+L PTRELAQQ+
Sbjct: 91 ALLLVPTRELAQQV 104
Score = 25.4 bits (53), Expect = 7.6
Identities = 9/44 (20%), Positives = 24/44 (54%)
Frame = +3
Query: 375 GVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAM 506
G+ + + F + N +Q+ + +++PT +Q++ P+A+
Sbjct: 6 GIREESSEKTFSDFNLDPRLQRAIHKCEFEKPTSVQSETIPLAL 49
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 35.1 bits (77), Expect = 0.009
Identities = 15/43 (34%), Positives = 26/43 (60%)
Frame = +2
Query: 455 GLQRTDAYSSSRLADSYVGKNLVGVAQTGSGKTLAYILPAIVH 583
G + S + ++ +G +++G A TGSGKTLA+ +P + H
Sbjct: 141 GFSKPMPIQSLVIPEASIGFDIIGKADTGSGKTLAFGIPILEH 183
Score = 29.5 bits (63), Expect = 0.47
Identities = 17/40 (42%), Positives = 21/40 (52%)
Frame = +1
Query: 556 GLHLASHCAHKQPTAYSER*WVPIALVLAPTRELAQQIQQ 675
G+ + HC Y + ALV+APTRELA QI Q
Sbjct: 177 GIPILEHCLRNVDAKYVQ------ALVVAPTRELAHQICQ 210
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 35.1 bits (77), Expect = 0.009
Identities = 16/36 (44%), Positives = 22/36 (61%)
Frame = +2
Query: 491 LADSYVGKNLVGVAQTGSGKTLAYILPAIVHINNQP 598
+A G+N +G A+TGSGKT A+ LP I + P
Sbjct: 38 IAQILEGRNCIGGAKTGSGKTAAFALPIIEKWSKDP 73
Score = 25.4 bits (53), Expect = 7.6
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = +1
Query: 628 ALVLAPTRELAQQIQQ 675
AL+L PTRELA QI +
Sbjct: 78 ALILTPTRELAIQIDE 93
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 33.9 bits (74), Expect = 0.022
Identities = 17/40 (42%), Positives = 24/40 (60%)
Frame = +2
Query: 512 KNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGSRLL 631
K+LV A TGSGKTLAY+LP + + G G+ ++
Sbjct: 39 KDLVVEAVTGSGKTLAYLLPCFDKVTRRDTDETGLGALIV 78
Score = 29.5 bits (63), Expect = 0.47
Identities = 10/37 (27%), Positives = 20/37 (54%)
Frame = +3
Query: 405 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSER 515
F+ N +++ V G+K+ TP+QA P+ + +
Sbjct: 3 FQSINIDKWLKNAVAAQGFKKMTPVQANAIPLFLKNK 39
Score = 25.8 bits (54), Expect = 5.8
Identities = 11/14 (78%), Positives = 13/14 (92%)
Frame = +1
Query: 628 ALVLAPTRELAQQI 669
AL++APTRELA QI
Sbjct: 75 ALIVAPTRELATQI 88
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 33.1 bits (72), Expect = 0.038
Identities = 14/23 (60%), Positives = 17/23 (73%)
Frame = +2
Query: 530 AQTGSGKTLAYILPAIVHINNQP 598
AQTGSGKTLAY+LP + + P
Sbjct: 185 AQTGSGKTLAYLLPIVQRLIRLP 207
Score = 25.8 bits (54), Expect = 5.8
Identities = 10/14 (71%), Positives = 13/14 (92%)
Frame = +1
Query: 628 ALVLAPTRELAQQI 669
A+++APTREL QQI
Sbjct: 219 AVIMAPTRELCQQI 232
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 33.1 bits (72), Expect = 0.038
Identities = 12/29 (41%), Positives = 20/29 (68%)
Frame = +2
Query: 515 NLVGVAQTGSGKTLAYILPAIVHINNQPP 601
NL+ V TG GK+L++++PA++ Q P
Sbjct: 1208 NLITVLPTGGGKSLSFLIPALIEKKRQTP 1236
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 33.1 bits (72), Expect = 0.038
Identities = 12/29 (41%), Positives = 20/29 (68%)
Frame = +2
Query: 515 NLVGVAQTGSGKTLAYILPAIVHINNQPP 601
NL+ V TG GK+L++++PA++ Q P
Sbjct: 1208 NLITVLPTGGGKSLSFLIPALIEKKRQTP 1236
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 32.3 bits (70), Expect = 0.066
Identities = 16/50 (32%), Positives = 28/50 (56%)
Frame = +3
Query: 339 EEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQ 488
+E N E+T S E N + FEE N + + +G+ GY+ P+ +Q++
Sbjct: 3 DEIMENVELTTS--EDVNAVSSFEEMNLKEDLLRGIYAYGYETPSAVQSR 50
Score = 27.5 bits (58), Expect = 1.9
Identities = 12/15 (80%), Positives = 14/15 (93%)
Frame = +1
Query: 628 ALVLAPTRELAQQIQ 672
AL+L+PTRELA QIQ
Sbjct: 92 ALILSPTRELAVQIQ 106
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 31.9 bits (69), Expect = 0.088
Identities = 14/16 (87%), Positives = 16/16 (100%)
Frame = +1
Query: 628 ALVLAPTRELAQQIQQ 675
AL+LAPTRELAQQIQ+
Sbjct: 90 ALILAPTRELAQQIQK 105
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 31.1 bits (67), Expect = 0.15
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Frame = +2
Query: 467 TDAYSSSRLADSYVG--KNLVGVAQTGSGKTLAYILPAIVHINNQPP 601
T+ + R A +G ++L+ A TGSGKT+AY+ P + + P
Sbjct: 67 TECTTIQRYAIPTIGSKRDLLACAPTGSGKTIAYLFPILQKLQLHVP 113
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 30.3 bits (65), Expect = 0.27
Identities = 17/49 (34%), Positives = 25/49 (51%)
Frame = +3
Query: 405 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSERI*LA*LKRVPAK 551
FE+ + G+ G++ P+PIQ + PIA+S R LA K K
Sbjct: 46 FEDYYLKRELLMGIFEAGFERPSPIQEESIPIALSGRDILARAKNGTGK 94
Score = 30.3 bits (65), Expect = 0.27
Identities = 10/47 (21%), Positives = 27/47 (57%)
Frame = +2
Query: 455 GLQRTDAYSSSRLADSYVGKNLVGVAQTGSGKTLAYILPAIVHINNQ 595
G +R + + G++++ A+ G+GKT A+++P++ ++ +
Sbjct: 63 GFERPSPIQEESIPIALSGRDILARAKNGTGKTAAFVIPSLEKVDTK 109
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 29.5 bits (63), Expect = 0.47
Identities = 14/26 (53%), Positives = 18/26 (69%)
Frame = +2
Query: 500 SYVGKNLVGVAQTGSGKTLAYILPAI 577
SY G V A TGSGKTL+Y++P +
Sbjct: 171 SYGGDVCVSAA-TGSGKTLSYVIPIV 195
>SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 732
Score = 29.1 bits (62), Expect = 0.62
Identities = 9/37 (24%), Positives = 23/37 (62%)
Frame = +2
Query: 158 RLDLATVAVDLEDLEDLVGKKNSLEVRTCVAQMGFCF 268
+ D++ + + + + +NS+++ +C+ Q+GFCF
Sbjct: 274 KFDISLIMALISAIINKTASQNSIKIISCLYQVGFCF 310
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 28.7 bits (61), Expect = 0.82
Identities = 10/30 (33%), Positives = 20/30 (66%)
Frame = +2
Query: 512 KNLVGVAQTGSGKTLAYILPAIVHINNQPP 601
+N++G +Q+G+GKT A+ L + ++ P
Sbjct: 154 RNMIGQSQSGTGKTAAFALTMLSRVDASVP 183
Score = 25.4 bits (53), Expect = 7.6
Identities = 11/16 (68%), Positives = 14/16 (87%)
Frame = +1
Query: 622 PIALVLAPTRELAQQI 669
P A+ LAP+RELA+QI
Sbjct: 185 PQAICLAPSRELARQI 200
>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1328
Score = 27.9 bits (59), Expect = 1.4
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +2
Query: 509 GKNLVGVAQTGSGKTLAYILPAIV 580
GK++ + TG GK+L Y LPA++
Sbjct: 534 GKDVFILMPTGGGKSLCYQLPAVI 557
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 27.5 bits (58), Expect = 1.9
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +2
Query: 512 KNLVGVAQTGSGKTLAYILPAIVHINNQPP 601
+N V A+TG+GKTLA++L A + P
Sbjct: 77 ENAVVQAKTGTGKTLAFLLVAFKDVLKGKP 106
>SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1004
Score = 27.5 bits (58), Expect = 1.9
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +2
Query: 539 GSGKTLAYILPAIVHINNQPPIRRGDGSRLLWSWRLPE 652
GSG+TLA + P ++ +N + S+ LW+W L E
Sbjct: 842 GSGRTLANLAPMMLITHNASHVPPRP-SKSLWNWLLGE 878
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 25.8 bits (54), Expect = 5.8
Identities = 11/46 (23%), Positives = 23/46 (50%)
Frame = +2
Query: 449 DNGLQRTDAYSSSRLADSYVGKNLVGVAQTGSGKTLAYILPAIVHI 586
D+G + + S +G +++ A++G GKT ++L + I
Sbjct: 68 DSGFEHPSEVQQVCIPQSILGTDVLCQAKSGMGKTAVFVLSTLQQI 113
>SPAC17A5.07c |ulp2||SUMO deconjugating cysteine peptidase Ulp2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 652
Score = 25.4 bits (53), Expect = 7.6
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
Frame = +3
Query: 258 DSVSLQPFNKN----FYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQ 401
D V L PF K FYDP P LK + +E+ + + V +H P+Q
Sbjct: 112 DVVEL-PFTKGGYGGFYDPRPGCLKFTTHEINVSYTDTSIPV----IHIPVQ 158
>SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 534
Score = 25.4 bits (53), Expect = 7.6
Identities = 12/22 (54%), Positives = 17/22 (77%), Gaps = 2/22 (9%)
Frame = -3
Query: 456 PLSLHLVAHNQENL--LLQSIE 397
PL LH+V+HN+++L LQ IE
Sbjct: 217 PLYLHIVSHNRKDLTVALQEIE 238
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,623,780
Number of Sequences: 5004
Number of extensions: 53425
Number of successful extensions: 185
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 185
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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