Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060145.seq
(677 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_16431| Best HMM Match : No HMM Matches (HMM E-Value=.) 71 9e-13
SB_18993| Best HMM Match : DEAD (HMM E-Value=9.3e-41) 61 9e-10
SB_3952| Best HMM Match : No HMM Matches (HMM E-Value=.) 57 2e-08
SB_14524| Best HMM Match : DEAD (HMM E-Value=3.7e-17) 54 1e-07
SB_45898| Best HMM Match : DEAD (HMM E-Value=1.3e-36) 50 1e-06
SB_46680| Best HMM Match : Helicase_C (HMM E-Value=3.8e-22) 47 1e-05
SB_43842| Best HMM Match : RNB (HMM E-Value=0) 44 1e-04
SB_11691| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.003
SB_25090| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.003
SB_5994| Best HMM Match : zf-CCHC (HMM E-Value=2.2e-19) 39 0.003
SB_19958| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.007
SB_18655| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.023
SB_52320| Best HMM Match : DEAD (HMM E-Value=0) 36 0.040
SB_37351| Best HMM Match : DEAD (HMM E-Value=0) 35 0.070
SB_9558| Best HMM Match : DEAD (HMM E-Value=0) 34 0.092
SB_34731| Best HMM Match : DEAD (HMM E-Value=3.8e-31) 33 0.16
SB_40196| Best HMM Match : DEAD (HMM E-Value=3.5e-07) 33 0.21
SB_44408| Best HMM Match : DEAD (HMM E-Value=6.8005e-42) 33 0.28
SB_38262| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.28
SB_30826| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.37
SB_56998| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.37
SB_51015| Best HMM Match : DEAD (HMM E-Value=0.0057) 31 0.86
SB_49218| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.1
SB_45527| Best HMM Match : DEAD (HMM E-Value=0.0069) 31 1.1
SB_52411| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.1
SB_57459| Best HMM Match : DEAD (HMM E-Value=1.50001e-40) 30 2.0
SB_6554| Best HMM Match : Isy1 (HMM E-Value=0) 30 2.0
SB_17563| Best HMM Match : DEAD (HMM E-Value=0) 29 3.5
SB_2247| Best HMM Match : DEAD (HMM E-Value=0) 29 3.5
SB_41683| Best HMM Match : DEAD (HMM E-Value=1.5e-27) 29 4.6
SB_25016| Best HMM Match : PDZ (HMM E-Value=5.6e-08) 28 6.0
SB_22560| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.0
SB_19782| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.0
SB_19645| Best HMM Match : Smr (HMM E-Value=8.2) 28 8.0
SB_8125| Best HMM Match : MFS_1 (HMM E-Value=3.2e-07) 28 8.0
>SB_16431| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 790
Score = 70.9 bits (166), Expect = 9e-13
Identities = 31/89 (34%), Positives = 47/89 (52%)
Frame = +3
Query: 249 PRWDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPD 428
P + +PFNKNFY+ HP + K+S E+++ R + VSG P F F +
Sbjct: 467 PEKSKIDYKPFNKNFYEEHPEITKQSKQEIDDLRKKMGIKVSGAMPARPCISFAHFGFDE 526
Query: 429 YVQQGVKTMGYKEPTPIQAQGWPIAMSER 515
+ ++ + Y +PT IQ Q PIA+S R
Sbjct: 527 QMMASIRKLEYTQPTQIQCQALPIALSGR 555
Score = 53.6 bits (123), Expect = 1e-07
Identities = 21/41 (51%), Positives = 34/41 (82%)
Frame = +2
Query: 509 GKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGSRLL 631
G++++G+A+TGSGKT A++ PA+VHI +QP ++ GDG +L
Sbjct: 554 GRDIIGIAKTGSGKTAAFLWPALVHIMDQPELQVGDGPIVL 594
Score = 28.7 bits (61), Expect = 4.6
Identities = 12/16 (75%), Positives = 13/16 (81%)
Frame = +1
Query: 622 PIALVLAPTRELAQQI 669
PI L+ APTREL QQI
Sbjct: 591 PIVLICAPTRELCQQI 606
>SB_18993| Best HMM Match : DEAD (HMM E-Value=9.3e-41)
Length = 690
Score = 60.9 bits (141), Expect = 9e-10
Identities = 27/56 (48%), Positives = 37/56 (66%)
Frame = +3
Query: 321 RSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQ 488
R +EV+ YR + ++TV+G V P+ FEE+ FPDY+Q K G+ EPT IQAQ
Sbjct: 57 RGQHEVDAYRRSKDLTVNGRNVPKPVTTFEESAFPDYIQSYFKREGFTEPTMIQAQ 112
Score = 33.9 bits (74), Expect = 0.12
Identities = 14/24 (58%), Positives = 19/24 (79%)
Frame = +2
Query: 560 YILPAIVHINNQPPIRRGDGSRLL 631
+ILP IVHIN+QP ++ GDG +L
Sbjct: 113 FILPGIVHINHQPLLQPGDGPIVL 136
Score = 33.5 bits (73), Expect = 0.16
Identities = 14/18 (77%), Positives = 16/18 (88%)
Frame = +1
Query: 622 PIALVLAPTRELAQQIQQ 675
PI LVL PTRELAQQ+Q+
Sbjct: 133 PIVLVLCPTRELAQQVQE 150
>SB_3952| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 592
Score = 56.8 bits (131), Expect = 2e-08
Identities = 30/86 (34%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
Frame = +3
Query: 261 SVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHE-VTVSGVEVHNPIQYFEEANFPDYVQ 437
+V QPF K+FY P + K +P E +E+R + E + V G P++ + + +
Sbjct: 58 TVVYQPFRKDFYVEVPELAKMTPEETDEFRLSLENIHVRGKNAPKPVKTWAQTGVQLKIL 117
Query: 438 QGVKTMGYKEPTPIQAQGWPIAMSER 515
+K Y++PTPIQAQ P+ MS R
Sbjct: 118 DVLKKNSYEKPTPIQAQAIPVIMSGR 143
>SB_14524| Best HMM Match : DEAD (HMM E-Value=3.7e-17)
Length = 500
Score = 53.6 bits (123), Expect = 1e-07
Identities = 24/74 (32%), Positives = 40/74 (54%)
Frame = +3
Query: 294 YDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPT 473
Y HPT+ + +V++ R+ E+ V G V +P+ F +F + + + + GY PT
Sbjct: 161 YKEHPTIAALTAEQVKQLRDKMEIKVKGEHVVSPVLEFFHCSFNESLSKNLSNHGYHSPT 220
Query: 474 PIQAQGWPIAMSER 515
PIQ Q P+ +S R
Sbjct: 221 PIQMQVLPVLLSGR 234
>SB_45898| Best HMM Match : DEAD (HMM E-Value=1.3e-36)
Length = 428
Score = 50.4 bits (115), Expect = 1e-06
Identities = 21/57 (36%), Positives = 34/57 (59%)
Frame = +3
Query: 345 YRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSER 515
+R + ++ G + PI+ ++EA PD + + V +GYK+PTPIQ Q PI + R
Sbjct: 83 FREDFNISTKGGRIPFPIRKWKEAQIPDSILEIVDKLGYKDPTPIQRQAIPIGLQNR 139
Score = 39.1 bits (87), Expect = 0.003
Identities = 16/33 (48%), Positives = 24/33 (72%)
Frame = +2
Query: 512 KNLVGVAQTGSGKTLAYILPAIVHINNQPPIRR 610
++++GVA+TGSGKT A+ +P +V I P I R
Sbjct: 139 RDIIGVAETGSGKTAAFAIPLLVWIMGLPKIER 171
Score = 33.5 bits (73), Expect = 0.16
Identities = 14/18 (77%), Positives = 17/18 (94%)
Frame = +1
Query: 622 PIALVLAPTRELAQQIQQ 675
P AL+LAPTRELAQQI++
Sbjct: 179 PYALILAPTRELAQQIEE 196
>SB_46680| Best HMM Match : Helicase_C (HMM E-Value=3.8e-22)
Length = 1058
Score = 47.2 bits (107), Expect = 1e-05
Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 4/60 (6%)
Frame = +3
Query: 333 EVEEYRNNHEVTVSGVEVHNPIQYF----EEANFPDYVQQGVKTMGYKEPTPIQAQGWPI 500
++ +R+ + V G +V +P++ F E FPDY+ V+ GY PTPIQ Q P+
Sbjct: 137 KINLFRHEQHIYVKGADVPDPVETFSQLIERYGFPDYIIHNVQERGYTTPTPIQMQATPL 196
>SB_43842| Best HMM Match : RNB (HMM E-Value=0)
Length = 1238
Score = 44.0 bits (99), Expect = 1e-04
Identities = 23/79 (29%), Positives = 38/79 (48%)
Frame = +3
Query: 279 FNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMG 458
F ++YD + V + S V+E R + + + G + PI+ F + N P + +
Sbjct: 32 FMWSYYDENEKVSRLSDEVVDEIRWKNGIHIEGEDCPKPIESFHDLNLPPELSTYLAKKN 91
Query: 459 YKEPTPIQAQGWPIAMSER 515
++ PTPIQ Q MS R
Sbjct: 92 FQVPTPIQMQSLSCVMSGR 110
Score = 42.3 bits (95), Expect = 3e-04
Identities = 17/36 (47%), Positives = 26/36 (72%)
Frame = +2
Query: 509 GKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGD 616
G++++G+A+TGSGKTLAY LP + + + P GD
Sbjct: 109 GRDIIGLAETGSGKTLAYSLPLCMLLRTKAPSNPGD 144
Score = 29.5 bits (63), Expect = 2.6
Identities = 11/16 (68%), Positives = 14/16 (87%)
Frame = +1
Query: 622 PIALVLAPTRELAQQI 669
P+AL+L PTREL QQ+
Sbjct: 146 PVALILTPTRELMQQV 161
>SB_11691| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1448
Score = 39.1 bits (87), Expect = 0.003
Identities = 17/44 (38%), Positives = 26/44 (59%)
Frame = +2
Query: 446 KDNGLQRTDAYSSSRLADSYVGKNLVGVAQTGSGKTLAYILPAI 577
KD G +A G++L+G A+TGSGKTLA+++P +
Sbjct: 588 KDMGFTTMTEIQHKSIAPLLKGRDLLGAAKTGSGKTLAFLVPVV 631
>SB_25090| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1170
Score = 39.1 bits (87), Expect = 0.003
Identities = 21/52 (40%), Positives = 27/52 (51%)
Frame = +3
Query: 360 EVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSER 515
EV VSG I FEEAN + V+ YK+PTP+Q PI ++ R
Sbjct: 698 EVLVSGNNPVRHINSFEEANLYEAFLNNVRKAQYKKPTPVQKYSIPIVIAGR 749
Score = 33.9 bits (74), Expect = 0.12
Identities = 13/28 (46%), Positives = 21/28 (75%)
Frame = +2
Query: 509 GKNLVGVAQTGSGKTLAYILPAIVHINN 592
G++++ AQTGSGKT A++LP + + N
Sbjct: 748 GRDVMACAQTGSGKTAAFLLPVMTSMMN 775
>SB_5994| Best HMM Match : zf-CCHC (HMM E-Value=2.2e-19)
Length = 185
Score = 39.1 bits (87), Expect = 0.003
Identities = 21/52 (40%), Positives = 27/52 (51%)
Frame = +3
Query: 360 EVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSER 515
EV VSG I FEEAN + V+ YK+PTP+Q PI ++ R
Sbjct: 121 EVLVSGNNPVRHINSFEEANLYEAFLNNVRKAQYKKPTPVQKYSIPIVIAGR 172
>SB_19958| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 797
Score = 37.9 bits (84), Expect = 0.007
Identities = 18/47 (38%), Positives = 26/47 (55%)
Frame = +2
Query: 455 GLQRTDAYSSSRLADSYVGKNLVGVAQTGSGKTLAYILPAIVHINNQ 595
G +R + L G++L+ AQTGSGKT AY+LP + + Q
Sbjct: 498 GYRRPTPVQKAALPIVMAGRDLMACAQTGSGKTAAYMLPVLTSLIKQ 544
Score = 35.5 bits (78), Expect = 0.040
Identities = 17/49 (34%), Positives = 23/49 (46%)
Frame = +3
Query: 369 VSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSER 515
VSG I F E F + + + GY+ PTP+Q PI M+ R
Sbjct: 469 VSGENQPPKITSFNELPFGEQLMANISRAGYRRPTPVQKAALPIVMAGR 517
Score = 28.7 bits (61), Expect = 4.6
Identities = 12/16 (75%), Positives = 15/16 (93%)
Frame = +1
Query: 622 PIALVLAPTRELAQQI 669
P+AL +APTRELA+QI
Sbjct: 553 PLALCVAPTRELAKQI 568
>SB_18655| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 697
Score = 36.3 bits (80), Expect = 0.023
Identities = 14/25 (56%), Positives = 21/25 (84%)
Frame = +2
Query: 512 KNLVGVAQTGSGKTLAYILPAIVHI 586
++++G A+TGSGKTLA+ +P I HI
Sbjct: 169 RDIIGAAETGSGKTLAFGIPIIQHI 193
>SB_52320| Best HMM Match : DEAD (HMM E-Value=0)
Length = 340
Score = 35.5 bits (78), Expect = 0.040
Identities = 13/23 (56%), Positives = 21/23 (91%)
Frame = +2
Query: 509 GKNLVGVAQTGSGKTLAYILPAI 577
G++++G A+TGSGKTLA+++P I
Sbjct: 87 GRDVLGAAKTGSGKTLAFLIPII 109
>SB_37351| Best HMM Match : DEAD (HMM E-Value=0)
Length = 688
Score = 34.7 bits (76), Expect = 0.070
Identities = 15/44 (34%), Positives = 27/44 (61%)
Frame = +2
Query: 446 KDNGLQRTDAYSSSRLADSYVGKNLVGVAQTGSGKTLAYILPAI 577
+D G+ +S Y G++++G A+TG+GKTL++ LP +
Sbjct: 89 EDRGITYLFPIQASTFNYIYDGEDVIGQARTGTGKTLSFALPLV 132
>SB_9558| Best HMM Match : DEAD (HMM E-Value=0)
Length = 436
Score = 34.3 bits (75), Expect = 0.092
Identities = 15/54 (27%), Positives = 30/54 (55%)
Frame = +2
Query: 437 TRCKDNGLQRTDAYSSSRLADSYVGKNLVGVAQTGSGKTLAYILPAIVHINNQP 598
++C G+++ + + G++ +G A+TGSGKT A+ LP + + + P
Sbjct: 20 SQCVAMGIKKPTEIQLNCVPPILQGRDCIGCAKTGSGKTAAFALPILQKLCDDP 73
>SB_34731| Best HMM Match : DEAD (HMM E-Value=3.8e-31)
Length = 978
Score = 33.5 bits (73), Expect = 0.16
Identities = 18/38 (47%), Positives = 25/38 (65%)
Frame = +2
Query: 515 NLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGSRL 628
+++ AQTGSGKTLAY+ P +VH + R G +RL
Sbjct: 417 HVICAAQTGSGKTLAYLAP-LVHRLREDEERHGILARL 453
>SB_40196| Best HMM Match : DEAD (HMM E-Value=3.5e-07)
Length = 456
Score = 33.1 bits (72), Expect = 0.21
Identities = 15/25 (60%), Positives = 20/25 (80%)
Frame = +2
Query: 509 GKNLVGVAQTGSGKTLAYILPAIVH 583
G+++ GVA GSGK LAY+LP I+H
Sbjct: 224 GRDVAGVAIEGSGKRLAYLLP-IIH 247
>SB_44408| Best HMM Match : DEAD (HMM E-Value=6.8005e-42)
Length = 238
Score = 32.7 bits (71), Expect = 0.28
Identities = 13/29 (44%), Positives = 22/29 (75%)
Frame = +2
Query: 512 KNLVGVAQTGSGKTLAYILPAIVHINNQP 598
K+++G+A+TGSGKT A+ LP + + + P
Sbjct: 2 KDVIGLAETGSGKTGAFALPILQALLDNP 30
>SB_38262| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1039
Score = 32.7 bits (71), Expect = 0.28
Identities = 12/21 (57%), Positives = 19/21 (90%)
Frame = +2
Query: 509 GKNLVGVAQTGSGKTLAYILP 571
GK++V +A+TGSGKT A+++P
Sbjct: 318 GKDVVAMARTGSGKTAAFLIP 338
>SB_30826| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1375
Score = 32.3 bits (70), Expect = 0.37
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = +3
Query: 396 IQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSER 515
I FE+ + + + V GYK+PTP+Q PI +R
Sbjct: 874 ILQFEDVDLGEILLHNVGLAGYKKPTPVQKYAIPIVKGKR 913
Score = 32.3 bits (70), Expect = 0.37
Identities = 13/30 (43%), Positives = 21/30 (70%)
Frame = +2
Query: 512 KNLVGVAQTGSGKTLAYILPAIVHINNQPP 601
++L+ AQTGSGKT A+++P + I + P
Sbjct: 913 RDLMACAQTGSGKTAAFLIPILSRIYMEGP 942
>SB_56998| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 478
Score = 32.3 bits (70), Expect = 0.37
Identities = 15/16 (93%), Positives = 16/16 (100%)
Frame = +1
Query: 628 ALVLAPTRELAQQIQQ 675
ALVLAPTRELAQQIQ+
Sbjct: 162 ALVLAPTRELAQQIQK 177
>SB_51015| Best HMM Match : DEAD (HMM E-Value=0.0057)
Length = 96
Score = 31.1 bits (67), Expect = 0.86
Identities = 13/39 (33%), Positives = 25/39 (64%)
Frame = +2
Query: 482 SSRLADSYVGKNLVGVAQTGSGKTLAYILPAIVHINNQP 598
+S + + +GK++ A TG+GKT A++LP + + +P
Sbjct: 38 ASTIPVALMGKDVCACAATGTGKTAAFMLPILERLLYRP 76
>SB_49218| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 480
Score = 30.7 bits (66), Expect = 1.1
Identities = 11/38 (28%), Positives = 17/38 (44%)
Frame = +3
Query: 381 EVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGW 494
++H P++ + FP Y + Y P P QA W
Sbjct: 6 DIHGPVRKLHKHGFPGYEEDYAAVFKYPTPWPEQAMEW 43
>SB_45527| Best HMM Match : DEAD (HMM E-Value=0.0069)
Length = 120
Score = 30.7 bits (66), Expect = 1.1
Identities = 14/18 (77%), Positives = 16/18 (88%)
Frame = +1
Query: 622 PIALVLAPTRELAQQIQQ 675
P ALVL+PTRELA QIQ+
Sbjct: 4 PQALVLSPTRELANQIQK 21
>SB_52411| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 370
Score = 30.7 bits (66), Expect = 1.1
Identities = 14/18 (77%), Positives = 16/18 (88%)
Frame = +1
Query: 622 PIALVLAPTRELAQQIQQ 675
P ALVL+PTRELA QIQ+
Sbjct: 66 PQALVLSPTRELANQIQK 83
>SB_57459| Best HMM Match : DEAD (HMM E-Value=1.50001e-40)
Length = 490
Score = 29.9 bits (64), Expect = 2.0
Identities = 16/55 (29%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Frame = +3
Query: 357 HEVTVSGVEVHNPI---QYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSE 512
HEV V + +P+ + FEE +++GV MG+ +P+ IQ P+ +++
Sbjct: 86 HEVEVLRSDPSSPLYSAKSFEELPLSANLRRGVYDMGFNKPSKIQETALPMLLAD 140
>SB_6554| Best HMM Match : Isy1 (HMM E-Value=0)
Length = 675
Score = 29.9 bits (64), Expect = 2.0
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Frame = +3
Query: 291 FYDPHPTVLKRSPYEVEEYRNN--HEVTVSGVEVHNPIQYFEEANFPDY 431
+ D VL E EE NN H++ + + +HNP YFE+ + DY
Sbjct: 217 YRDEDDGVLVPIEQEAEEEVNNKLHKILIVNM-IHNPFNYFEKKSPTDY 264
>SB_17563| Best HMM Match : DEAD (HMM E-Value=0)
Length = 439
Score = 29.1 bits (62), Expect = 3.5
Identities = 10/43 (23%), Positives = 23/43 (53%)
Frame = +2
Query: 449 DNGLQRTDAYSSSRLADSYVGKNLVGVAQTGSGKTLAYILPAI 577
+ G + + + G++++ A+ G+GKT AY++P +
Sbjct: 64 EKGFDKPSPIQEESIPVALAGRDILARAKNGTGKTAAYLVPLL 106
Score = 27.9 bits (59), Expect = 8.0
Identities = 15/49 (30%), Positives = 25/49 (51%)
Frame = +3
Query: 405 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSERI*LA*LKRVPAK 551
FE+ + G+ G+ +P+PIQ + P+A++ R LA K K
Sbjct: 49 FEDYCLKRELLMGIFEKGFDKPSPIQEESIPVALAGRDILARAKNGTGK 97
>SB_2247| Best HMM Match : DEAD (HMM E-Value=0)
Length = 439
Score = 29.1 bits (62), Expect = 3.5
Identities = 10/43 (23%), Positives = 23/43 (53%)
Frame = +2
Query: 449 DNGLQRTDAYSSSRLADSYVGKNLVGVAQTGSGKTLAYILPAI 577
+ G + + + G++++ A+ G+GKT AY++P +
Sbjct: 64 EKGFDKPSPIQEESIPVALAGRDILARAKNGTGKTAAYLVPLL 106
Score = 27.9 bits (59), Expect = 8.0
Identities = 15/49 (30%), Positives = 25/49 (51%)
Frame = +3
Query: 405 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSERI*LA*LKRVPAK 551
FE+ + G+ G+ +P+PIQ + P+A++ R LA K K
Sbjct: 49 FEDYCLKRELLMGIFEKGFDKPSPIQEESIPVALAGRDILARAKNGTGK 97
>SB_41683| Best HMM Match : DEAD (HMM E-Value=1.5e-27)
Length = 559
Score = 28.7 bits (61), Expect = 4.6
Identities = 12/46 (26%), Positives = 26/46 (56%)
Frame = +2
Query: 440 RCKDNGLQRTDAYSSSRLADSYVGKNLVGVAQTGSGKTLAYILPAI 577
+ K G+ + L + K+L+ ++TG+GK+L ++LP++
Sbjct: 174 KLKKMGITKPVPIQEKALPSVFSHKSLLIKSETGTGKSLVFLLPSV 219
>SB_25016| Best HMM Match : PDZ (HMM E-Value=5.6e-08)
Length = 816
Score = 28.3 bits (60), Expect = 6.0
Identities = 16/74 (21%), Positives = 33/74 (44%), Gaps = 1/74 (1%)
Frame = +3
Query: 300 PHPTVLKRSPYEVEEYRNN-HEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTP 476
P P V + S Y +Y + H S ++ + ++ P Y+QQ ++ +G
Sbjct: 341 PPPLVNQISQYNGSQYNQSLHYSLPSTFQISPVTPSLQPSSVPFYLQQDLEALGRISQPR 400
Query: 477 IQAQGWPIAMSERI 518
+ Q P+A +++
Sbjct: 401 VSPQSRPLASGQQV 414
>SB_22560| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 308
Score = 28.3 bits (60), Expect = 6.0
Identities = 13/27 (48%), Positives = 20/27 (74%), Gaps = 1/27 (3%)
Frame = +2
Query: 500 SYVGKNLVGVAQTGSGKTLAY-ILPAI 577
SY G++ +GV TG GK++ + ILPA+
Sbjct: 192 SYTGRDGIGVLPTGYGKSVIFHILPAM 218
>SB_19782| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 728
Score = 27.9 bits (59), Expect = 8.0
Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Frame = -2
Query: 241 CSDLQRILFSHQILQILQIYCHRC-QIETN 155
CS +L +IL+ +YC +C Q ETN
Sbjct: 14 CSLCSEVLTEPKILRCFHVYCQKCLQAETN 43
>SB_19645| Best HMM Match : Smr (HMM E-Value=8.2)
Length = 346
Score = 27.9 bits (59), Expect = 8.0
Identities = 31/97 (31%), Positives = 40/97 (41%), Gaps = 11/97 (11%)
Frame = +3
Query: 234 SEHASPRWDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQ---- 401
SE AS S SLQ N N DP L R+ + R +VT ++ P Q
Sbjct: 239 SEGASLMKLSTSLQSLNTNIKDPRAAFLNRTKIKDLLVRTITKVTFLQQQIAQPRQLTLT 298
Query: 402 -YFEEANFPDYV----QQG--VKTMGYKEPTPIQAQG 491
YF E + DYV Q G + G P+P + G
Sbjct: 299 KYF-ETDSSDYVVELLQDGSAANSKGSDTPSPASSGG 334
>SB_8125| Best HMM Match : MFS_1 (HMM E-Value=3.2e-07)
Length = 401
Score = 27.9 bits (59), Expect = 8.0
Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Frame = -2
Query: 172 CQIETNYRRICCLLQIWN-HRFHGYYSS 92
C + +YRR CC L +W H + Y+SS
Sbjct: 218 CCVRVDYRRKCC-LHVWRVHTTNTYWSS 244
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,537,201
Number of Sequences: 59808
Number of extensions: 400401
Number of successful extensions: 1049
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 963
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1048
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1745338465
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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