Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060145.seq
(677 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20) ... 98 5e-21
At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helica... 87 8e-18
At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helica... 87 8e-18
At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative simila... 71 9e-13
At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical ... 67 9e-12
At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical ... 67 9e-12
At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical ... 67 9e-12
At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar... 63 2e-10
At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative simila... 62 4e-10
At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar... 61 6e-10
At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA... 51 6e-07
At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative 46 2e-05
At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative simila... 43 2e-04
At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong sim... 42 3e-04
At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar... 42 4e-04
At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative simila... 41 7e-04
At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative simila... 41 7e-04
At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contai... 40 0.001
At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative non-co... 40 0.001
At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly id... 40 0.002
At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)... 40 0.002
At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong ... 39 0.003
At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical ... 39 0.003
At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar... 38 0.005
At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative 38 0.006
At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)... 38 0.006
At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)... 38 0.008
At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar... 37 0.014
At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)... 36 0.019
At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11) ... 36 0.019
At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11) ... 36 0.019
At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)... 36 0.033
At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar... 35 0.043
At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9) s... 35 0.043
At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein c... 34 0.075
At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)... 34 0.075
At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar... 33 0.13
At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar... 33 0.13
At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative simila... 33 0.13
At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar... 33 0.13
At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly iden... 33 0.23
At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contai... 33 0.23
At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative simila... 32 0.40
At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contai... 32 0.40
At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative EUKARY... 31 0.53
At3g13920.1 68416.m01758 eukaryotic translation initiation facto... 31 0.70
At1g72730.1 68414.m08410 eukaryotic translation initiation facto... 31 0.70
At1g54270.1 68414.m06187 eukaryotic translation initiation facto... 31 0.70
At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA he... 31 0.93
At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein c... 31 0.93
At1g51380.1 68414.m05780 eukaryotic translation initiation facto... 30 1.2
At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /... 30 1.2
At3g49500.1 68416.m05410 RNA-dependent RNA polymerase (SDE1) ide... 30 1.6
At5g08110.1 68418.m00946 DEAD/DEAH box helicase, putative severa... 29 2.8
At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative simila... 29 2.8
At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative simila... 29 2.8
At5g25520.2 68418.m03037 transcription elongation factor-related... 28 4.9
At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative simila... 28 4.9
At2g33420.1 68415.m04096 expressed protein 28 4.9
At2g01830.3 68415.m00115 histidine kinase (AHK4) (WOL) identical... 28 4.9
At2g01830.2 68415.m00116 histidine kinase (AHK4) (WOL) identical... 28 4.9
At2g01830.1 68415.m00114 histidine kinase (AHK4) (WOL) identical... 28 4.9
At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative 28 6.5
At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)... 28 6.5
At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18) 28 6.5
At1g04470.1 68414.m00438 expressed protein EST gb|ATTS5672 comes... 28 6.5
At5g27680.1 68418.m03319 DEAD/DEAH box helicase, putative simila... 27 8.6
At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)... 27 8.6
At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)... 27 8.6
At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative 27 8.6
At2g25460.1 68415.m03049 expressed protein 27 8.6
At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to... 27 8.6
>At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20)
similar to ethylene-responsive RNA helicase GI:5669638
from [Lycopersicon esculentum]; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 501
Score = 97.9 bits (233), Expect = 5e-21
Identities = 46/91 (50%), Positives = 57/91 (62%), Gaps = 1/91 (1%)
Frame = +3
Query: 246 SPR-WDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANF 422
SPR D L PF KNFY P V + EVEEYR E+TV G ++ P++ F + F
Sbjct: 47 SPRKLDLDGLTPFEKNFYVESPAVAAMTDTEVEEYRKLREITVEGKDIPKPVKSFRDVGF 106
Query: 423 PDYVQQGVKTMGYKEPTPIQAQGWPIAMSER 515
PDYV + VK G+ EPTPIQ+QGWP+AM R
Sbjct: 107 PDYVLEEVKKAGFTEPTPIQSQGWPMAMKGR 137
Score = 62.1 bits (144), Expect = 3e-10
Identities = 25/41 (60%), Positives = 35/41 (85%)
Frame = +2
Query: 509 GKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGSRLL 631
G++L+G+A+TGSGKTL+Y+LPAIVH+N QP + GDG +L
Sbjct: 136 GRDLIGIAETGSGKTLSYLLPAIVHVNAQPMLAHGDGPIVL 176
Score = 33.9 bits (74), Expect = 0.099
Identities = 16/18 (88%), Positives = 16/18 (88%)
Frame = +1
Query: 622 PIALVLAPTRELAQQIQQ 675
PI LVLAPTRELA QIQQ
Sbjct: 173 PIVLVLAPTRELAVQIQQ 190
>At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 591
Score = 87.4 bits (207), Expect = 8e-18
Identities = 37/89 (41%), Positives = 57/89 (64%)
Frame = +3
Query: 249 PRWDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPD 428
P+ + +L F KNFY PTV + +V YR +++V G +V P++ F++ANFPD
Sbjct: 115 PKQNFGNLVHFEKNFYVESPTVQAMTEQDVAMYRTERDISVEGRDVPKPMKMFQDANFPD 174
Query: 429 YVQQGVKTMGYKEPTPIQAQGWPIAMSER 515
+ + + +G+ EPTPIQAQGWP+A+ R
Sbjct: 175 NILEAIAKLGFTEPTPIQAQGWPMALKGR 203
Score = 57.6 bits (133), Expect = 7e-09
Identities = 23/41 (56%), Positives = 35/41 (85%)
Frame = +2
Query: 509 GKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGSRLL 631
G++L+G+A+TGSGKTLAY+LPA+VH++ QP + + DG +L
Sbjct: 202 GRDLIGIAETGSGKTLAYLLPALVHVSAQPRLGQDDGPIVL 242
Score = 32.3 bits (70), Expect = 0.30
Identities = 14/18 (77%), Positives = 16/18 (88%)
Frame = +1
Query: 622 PIALVLAPTRELAQQIQQ 675
PI L+LAPTRELA QIQ+
Sbjct: 239 PIVLILAPTRELAVQIQE 256
>At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 484
Score = 87.4 bits (207), Expect = 8e-18
Identities = 37/89 (41%), Positives = 57/89 (64%)
Frame = +3
Query: 249 PRWDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPD 428
P+ + +L F KNFY PTV + +V YR +++V G +V P++ F++ANFPD
Sbjct: 115 PKQNFGNLVHFEKNFYVESPTVQAMTEQDVAMYRTERDISVEGRDVPKPMKMFQDANFPD 174
Query: 429 YVQQGVKTMGYKEPTPIQAQGWPIAMSER 515
+ + + +G+ EPTPIQAQGWP+A+ R
Sbjct: 175 NILEAIAKLGFTEPTPIQAQGWPMALKGR 203
Score = 57.6 bits (133), Expect = 7e-09
Identities = 23/41 (56%), Positives = 35/41 (85%)
Frame = +2
Query: 509 GKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGSRLL 631
G++L+G+A+TGSGKTLAY+LPA+VH++ QP + + DG +L
Sbjct: 202 GRDLIGIAETGSGKTLAYLLPALVHVSAQPRLGQDDGPIVL 242
Score = 32.3 bits (70), Expect = 0.30
Identities = 14/18 (77%), Positives = 16/18 (88%)
Frame = +1
Query: 622 PIALVLAPTRELAQQIQQ 675
PI L+LAPTRELA QIQ+
Sbjct: 239 PIVLILAPTRELAVQIQE 256
>At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative similar
to RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 760
Score = 70.5 bits (165), Expect = 9e-13
Identities = 29/85 (34%), Positives = 47/85 (55%)
Frame = +3
Query: 261 SVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQ 440
S+ +P NK+FY+ ++ + E +YR + VSG +VH P++ FE+ F +
Sbjct: 182 SIDYEPINKDFYEELESISGMTEQETTDYRQRLGIRVSGFDVHRPVKTFEDCGFSSQIMS 241
Query: 441 GVKTMGYKEPTPIQAQGWPIAMSER 515
+K Y++PT IQ Q PI +S R
Sbjct: 242 AIKKQAYEKPTAIQCQALPIVLSGR 266
Score = 54.0 bits (124), Expect = 9e-08
Identities = 25/67 (37%), Positives = 40/67 (59%)
Frame = +2
Query: 419 FS*LCATRCKDNGLQRTDAYSSSRLADSYVGKNLVGVAQTGSGKTLAYILPAIVHINNQP 598
FS + K ++ A L G++++G+A+TGSGKT A++LP IVHI +QP
Sbjct: 235 FSSQIMSAIKKQAYEKPTAIQCQALPIVLSGRDVIGIAKTGSGKTAAFVLPMIVHIMDQP 294
Query: 599 PIRRGDG 619
++R +G
Sbjct: 295 ELQRDEG 301
>At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 67.3 bits (157), Expect = 9e-12
Identities = 32/72 (44%), Positives = 40/72 (55%)
Frame = +3
Query: 300 PHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPI 479
P P+ S E Y HE+TVSG +V P+ FE FP + + V + G+ PTPI
Sbjct: 125 PLPSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPI 184
Query: 480 QAQGWPIAMSER 515
QAQ WPIAM R
Sbjct: 185 QAQSWPIAMQGR 196
Score = 39.1 bits (87), Expect = 0.003
Identities = 13/26 (50%), Positives = 22/26 (84%)
Frame = +2
Query: 509 GKNLVGVAQTGSGKTLAYILPAIVHI 586
G+++V +A+TGSGKTL Y++P +H+
Sbjct: 195 GRDIVAIAKTGSGKTLGYLIPGFLHL 220
Score = 29.5 bits (63), Expect = 2.1
Identities = 13/18 (72%), Positives = 15/18 (83%)
Frame = +1
Query: 622 PIALVLAPTRELAQQIQQ 675
P LVL+PTRELA QIQ+
Sbjct: 231 PTILVLSPTRELATQIQE 248
>At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 67.3 bits (157), Expect = 9e-12
Identities = 32/72 (44%), Positives = 40/72 (55%)
Frame = +3
Query: 300 PHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPI 479
P P+ S E Y HE+TVSG +V P+ FE FP + + V + G+ PTPI
Sbjct: 125 PLPSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPI 184
Query: 480 QAQGWPIAMSER 515
QAQ WPIAM R
Sbjct: 185 QAQSWPIAMQGR 196
Score = 39.1 bits (87), Expect = 0.003
Identities = 13/26 (50%), Positives = 22/26 (84%)
Frame = +2
Query: 509 GKNLVGVAQTGSGKTLAYILPAIVHI 586
G+++V +A+TGSGKTL Y++P +H+
Sbjct: 195 GRDIVAIAKTGSGKTLGYLIPGFLHL 220
Score = 29.5 bits (63), Expect = 2.1
Identities = 13/18 (72%), Positives = 15/18 (83%)
Frame = +1
Query: 622 PIALVLAPTRELAQQIQQ 675
P LVL+PTRELA QIQ+
Sbjct: 231 PTILVLSPTRELATQIQE 248
>At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 618
Score = 67.3 bits (157), Expect = 9e-12
Identities = 32/72 (44%), Positives = 40/72 (55%)
Frame = +3
Query: 300 PHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPI 479
P P+ S E Y HE+TVSG +V P+ FE FP + + V + G+ PTPI
Sbjct: 125 PLPSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPI 184
Query: 480 QAQGWPIAMSER 515
QAQ WPIAM R
Sbjct: 185 QAQSWPIAMQGR 196
Score = 39.1 bits (87), Expect = 0.003
Identities = 13/26 (50%), Positives = 22/26 (84%)
Frame = +2
Query: 509 GKNLVGVAQTGSGKTLAYILPAIVHI 586
G+++V +A+TGSGKTL Y++P +H+
Sbjct: 195 GRDIVAIAKTGSGKTLGYLIPGFLHL 220
Score = 29.5 bits (63), Expect = 2.1
Identities = 13/18 (72%), Positives = 15/18 (83%)
Frame = +1
Query: 622 PIALVLAPTRELAQQIQQ 675
P LVL+PTRELA QIQ+
Sbjct: 231 PTILVLSPTRELATQIQE 248
>At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 1088
Score = 62.9 bits (146), Expect = 2e-10
Identities = 33/82 (40%), Positives = 44/82 (53%), Gaps = 4/82 (4%)
Frame = +3
Query: 282 NKNFYDPH----PTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVK 449
NK+ PH P V SP E+ YR HEVT +G + P FE + P + + +
Sbjct: 394 NKSLVRPHFVTSPDVPHLSPVEI--YRKQHEVTTTGENIPAPYITFESSGLPPEILRELL 451
Query: 450 TMGYKEPTPIQAQGWPIAMSER 515
+ G+ PTPIQAQ WPIA+ R
Sbjct: 452 SAGFPSPTPIQAQTWPIALQSR 473
Score = 35.1 bits (77), Expect = 0.043
Identities = 12/23 (52%), Positives = 20/23 (86%)
Frame = +2
Query: 512 KNLVGVAQTGSGKTLAYILPAIV 580
+++V +A+TGSGKTL Y++PA +
Sbjct: 473 RDIVAIAKTGSGKTLGYLIPAFI 495
Score = 29.9 bits (64), Expect = 1.6
Identities = 13/17 (76%), Positives = 14/17 (82%)
Frame = +1
Query: 622 PIALVLAPTRELAQQIQ 672
P L+LAPTRELA QIQ
Sbjct: 508 PTVLILAPTRELATQIQ 524
>At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative similar
to RNA helicase GB:A57514 GI:897915 from [Rattus
norvegicus]; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 989
Score = 61.7 bits (143), Expect = 4e-10
Identities = 29/84 (34%), Positives = 44/84 (52%)
Frame = +3
Query: 264 VSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQG 443
+ +PF KNFY + + + V YR E+ V G +V PIQ++ + +
Sbjct: 351 IEYEPFRKNFYIEVKDISRMTQDAVNAYRKELELKVHGKDVPRPIQFWHQTGLTSKILDT 410
Query: 444 VKTMGYKEPTPIQAQGWPIAMSER 515
+K + Y++P PIQAQ PI MS R
Sbjct: 411 LKKLNYEKPMPIQAQALPIIMSGR 434
Score = 55.6 bits (128), Expect = 3e-08
Identities = 21/37 (56%), Positives = 30/37 (81%)
Frame = +2
Query: 509 GKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDG 619
G++ +GVA+TGSGKTL ++LP + HI +QPP+ GDG
Sbjct: 433 GRDCIGVAKTGSGKTLGFVLPMLRHIKDQPPVEAGDG 469
Score = 30.3 bits (65), Expect = 1.2
Identities = 13/16 (81%), Positives = 14/16 (87%)
Frame = +1
Query: 622 PIALVLAPTRELAQQI 669
PI LV+APTREL QQI
Sbjct: 470 PIGLVMAPTRELVQQI 485
>At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar to
RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 1166
Score = 61.3 bits (142), Expect = 6e-10
Identities = 28/84 (33%), Positives = 44/84 (52%)
Frame = +3
Query: 264 VSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQG 443
+ +PF KNFY + + + EV YR E+ V G +V PI+++ + +
Sbjct: 484 IEYEPFRKNFYIEVKDISRMTQEEVNTYRKELELKVHGKDVPRPIKFWHQTGLTSKILDT 543
Query: 444 VKTMGYKEPTPIQAQGWPIAMSER 515
+K + Y++P PIQ Q PI MS R
Sbjct: 544 MKKLNYEKPMPIQTQALPIIMSGR 567
Score = 55.6 bits (128), Expect = 3e-08
Identities = 21/37 (56%), Positives = 30/37 (81%)
Frame = +2
Query: 509 GKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDG 619
G++ +GVA+TGSGKTL ++LP + HI +QPP+ GDG
Sbjct: 566 GRDCIGVAKTGSGKTLGFVLPMLRHIKDQPPVEAGDG 602
Score = 30.3 bits (65), Expect = 1.2
Identities = 13/16 (81%), Positives = 14/16 (87%)
Frame = +1
Query: 622 PIALVLAPTRELAQQI 669
PI LV+APTREL QQI
Sbjct: 603 PIGLVMAPTRELVQQI 618
>At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA
helicase DBP2 - Saccharomyces cerevisiae, PID:g5272
Length = 542
Score = 51.2 bits (117), Expect = 6e-07
Identities = 25/75 (33%), Positives = 41/75 (54%)
Frame = +3
Query: 291 FYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEP 470
++ P V K S +++ R +TV+G ++ PI+ F + FP + + +K G P
Sbjct: 61 WWKPPLHVRKMSTKQMDLIRKQWHITVNGEDIPPPIKNFMDMKFPSPLLRMLKDKGIMHP 120
Query: 471 TPIQAQGWPIAMSER 515
TPIQ QG P+ +S R
Sbjct: 121 TPIQVQGLPVVLSGR 135
Score = 40.3 bits (90), Expect = 0.001
Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
Frame = +2
Query: 446 KDNGLQRTDAYSSSRLADSYVGKNLVGVAQTGSGKTLAYILPAIVHINNQP---PIRRGD 616
KD G+ L G++++G+A TGSGKTL ++LP I+ + PI G+
Sbjct: 113 KDKGIMHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIILALQEEIMMPIAAGE 172
Query: 617 G 619
G
Sbjct: 173 G 173
>At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative
Length = 591
Score = 46.4 bits (105), Expect = 2e-05
Identities = 23/74 (31%), Positives = 39/74 (52%)
Frame = +3
Query: 294 YDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPT 473
+ P + K S + + R + V+G ++ PI+ F++ FP V +K G +PT
Sbjct: 111 WKPPLHIRKMSSKQRDLIRKQWHIIVNGDDIPPPIKNFKDMKFPRPVLDTLKEKGIVQPT 170
Query: 474 PIQAQGWPIAMSER 515
PIQ QG P+ ++ R
Sbjct: 171 PIQVQGLPVILAGR 184
Score = 38.3 bits (85), Expect = 0.005
Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
Frame = +2
Query: 446 KDNGLQRTDAYSSSRLADSYVGKNLVGVAQTGSGKTLAYILPAIVHINNQP---PIRRGD 616
K+ G+ + L G++++G+A TGSGKTL ++LP I+ + PI G+
Sbjct: 162 KEKGIVQPTPIQVQGLPVILAGRDMIGIAFTGSGKTLVFVLPMIMIALQEEMMMPIAAGE 221
Query: 617 G 619
G
Sbjct: 222 G 222
>At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative similar
to p68 RNA helicase [Schizosaccharomyces pombe]
GI:173419
Length = 537
Score = 43.2 bits (97), Expect = 2e-04
Identities = 16/26 (61%), Positives = 25/26 (96%)
Frame = +2
Query: 509 GKNLVGVAQTGSGKTLAYILPAIVHI 586
G++L+G+A+TGSGKTLA+ +PAI+H+
Sbjct: 151 GRDLIGIAKTGSGKTLAFGIPAIMHV 176
Score = 34.7 bits (76), Expect = 0.057
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Frame = +3
Query: 333 EVEEYRNNHEVTVSGVEV--HNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAM 506
E E + VT GVE + ++ F E+N P+ V KT +++P+PIQ+ WP +
Sbjct: 92 EGESEQQKVVVTGKGVEEAKYAALKTFAESNLPENVLDCCKT--FEKPSPIQSHTWPFLL 149
Query: 507 SER 515
R
Sbjct: 150 DGR 152
>At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong
similarity to RNA helicase RH26 [Arabidopsis thaliana]
GI:3776025; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH26
GI:3776024
Length = 850
Score = 42.3 bits (95), Expect = 3e-04
Identities = 20/55 (36%), Positives = 31/55 (56%)
Frame = +2
Query: 446 KDNGLQRTDAYSSSRLADSYVGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRR 610
KD G + + L GK+++ A+TG+GKT+A++LPAI + PP R
Sbjct: 398 KDAGFETMTVVQEATLPIILQGKDVLAKAKTGTGKTVAFLLPAIEAVIKSPPASR 452
>At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar to
SP|P23394 Pre-mRNA splicing factor RNA helicase PRP28
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 733
Score = 41.9 bits (94), Expect = 4e-04
Identities = 20/93 (21%), Positives = 48/93 (51%)
Frame = +3
Query: 237 EHASPRWDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEA 416
E A+ +DS ++ ++++ D + + + +R + ++ G + P++ +EE+
Sbjct: 262 EEAADTYDSFDMR-VDRHWSDKRLEEMTERDWRI--FREDFNISYKGSRIPRPMRSWEES 318
Query: 417 NFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSER 515
+ + V+ GYK+P+PIQ P+ + +R
Sbjct: 319 KLTSELLKAVERAGYKKPSPIQMAAIPLGLQQR 351
Score = 41.9 bits (94), Expect = 4e-04
Identities = 14/31 (45%), Positives = 26/31 (83%)
Frame = +2
Query: 512 KNLVGVAQTGSGKTLAYILPAIVHINNQPPI 604
++++G+A+TGSGKT A++LP + +I+ PP+
Sbjct: 351 RDVIGIAETGSGKTAAFVLPMLAYISRLPPM 381
Score = 31.9 bits (69), Expect = 0.40
Identities = 13/18 (72%), Positives = 17/18 (94%)
Frame = +1
Query: 622 PIALVLAPTRELAQQIQQ 675
P A+V+APTRELAQQI++
Sbjct: 390 PYAVVMAPTRELAQQIEE 407
>At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative similar
to RNA helicase involved in rRNA processing GB:6321267
from [Saccharomyces cerevisiae]c, ontains DEAD and DEAH
box domain
Length = 541
Score = 41.1 bits (92), Expect = 7e-04
Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 4/60 (6%)
Frame = +3
Query: 348 RNNHEVTVSGVEVHNPIQYFEEANF----PDYVQQGVKTMGYKEPTPIQAQGWPIAMSER 515
R + + VSG + P++ F E + Y+ + + +G+KEPTPIQ Q PI +S R
Sbjct: 120 RKQYSIHVSGNNIPPPLKSFAELSSRYGCEGYILRNLAELGFKEPTPIQRQAIPILLSGR 179
Score = 28.7 bits (61), Expect = 3.7
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +2
Query: 509 GKNLVGVAQTGSGKTLAYILPAIVHI 586
G+ A TGSGKT A+I P ++ +
Sbjct: 178 GRECFACAPTGSGKTFAFICPMLIKL 203
>At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative similar
to gb|L13612 DEAD-box protein (dbp45A) from Drosophila
melanogaster and is a member of PF|00270 DEAD/DEAH box
helicase family
Length = 491
Score = 41.1 bits (92), Expect = 7e-04
Identities = 17/52 (32%), Positives = 31/52 (59%)
Frame = +2
Query: 443 CKDNGLQRTDAYSSSRLADSYVGKNLVGVAQTGSGKTLAYILPAIVHINNQP 598
CK+ G+++ + + G++++G+AQTGSGKT A+ LP + + P
Sbjct: 73 CKELGMRKPTPVQTHCVPKILAGRDVLGLAQTGSGKTAAFALPILHRLAEDP 124
>At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contains
Pfam profiles PF00270:DEAD/DEAH box helicase and
PF00271: Helicase conserved C-terminal domain;
identical to cDNA RH27 helicase, partial GI:4033334
Length = 633
Score = 40.3 bits (90), Expect = 0.001
Identities = 16/44 (36%), Positives = 29/44 (65%)
Frame = +2
Query: 446 KDNGLQRTDAYSSSRLADSYVGKNLVGVAQTGSGKTLAYILPAI 577
K+ G R + + +G++++G A+TGSGKTLA+++PA+
Sbjct: 170 KEMGFARMTQIQAKAIPPLMMGEDVLGAARTGSGKTLAFLIPAV 213
Score = 27.9 bits (59), Expect = 6.5
Identities = 19/78 (24%), Positives = 31/78 (39%)
Frame = +3
Query: 273 QPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKT 452
+P K T K EVE+ ++ + + + FE + D + +K
Sbjct: 115 EPKKKKKKQRKDTEAKSEEEEVEDKEEEKKLEETSIMTNKT---FESLSLSDNTYKSIKE 171
Query: 453 MGYKEPTPIQAQGWPIAM 506
MG+ T IQA+ P M
Sbjct: 172 MGFARMTQIQAKAIPPLM 189
>At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative
non-consensus acceptor splice site AT at exon 2; similar
to DEAD box helicase protein GB:NP_006764 from [Homo
sapiens], contains Pfam profile: PF00270 DEAD/DEAH box
helicase
Length = 568
Score = 40.3 bits (90), Expect = 0.001
Identities = 17/44 (38%), Positives = 28/44 (63%)
Frame = +2
Query: 446 KDNGLQRTDAYSSSRLADSYVGKNLVGVAQTGSGKTLAYILPAI 577
K+ G Q + + GK+++G A+TGSGKTLA+++PA+
Sbjct: 105 KEMGFQYMTQIQAGSIQPLLEGKDVLGAARTGSGKTLAFLIPAV 148
>At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:1488521; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 671
Score = 39.5 bits (88), Expect = 0.002
Identities = 20/53 (37%), Positives = 30/53 (56%)
Frame = +2
Query: 440 RCKDNGLQRTDAYSSSRLADSYVGKNLVGVAQTGSGKTLAYILPAIVHINNQP 598
+ K NG++ +S G +LVG A+TG GKTLA++LP + + N P
Sbjct: 110 KLKANGIEALFPIQASTFDMVLDGADLVGRARTGQGKTLAFVLPILESLVNGP 162
>At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)
identical to cDNA DEAD box RNA helicase, RH28 GI:3776026
Length = 789
Score = 39.5 bits (88), Expect = 0.002
Identities = 21/50 (42%), Positives = 29/50 (58%)
Frame = +3
Query: 366 TVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSER 515
TV GV H F E N + + +T+GYK+PTPIQA P+A++ R
Sbjct: 158 TVDGVSFH--ADTFMELNLSRPLLRACETLGYKKPTPIQAACIPLALTGR 205
Score = 31.5 bits (68), Expect = 0.53
Identities = 15/52 (28%), Positives = 28/52 (53%)
Frame = +2
Query: 443 CKDNGLQRTDAYSSSRLADSYVGKNLVGVAQTGSGKTLAYILPAIVHINNQP 598
C+ G ++ ++ + + G++L A TGSGKT A+ LP + + +P
Sbjct: 182 CETLGYKKPTPIQAACIPLALTGRDLCASAITGSGKTAAFALPTLERLLFRP 233
>At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong
similarity to RNA helicase RH25 [Arabidopsis thaliana]
GI:3776023; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH31
GI:3776030
Length = 522
Score = 39.1 bits (87), Expect = 0.003
Identities = 18/52 (34%), Positives = 30/52 (57%)
Frame = +2
Query: 446 KDNGLQRTDAYSSSRLADSYVGKNLVGVAQTGSGKTLAYILPAIVHINNQPP 601
KD G + + L GK+++ A+TG+GKT+A++LP+I + PP
Sbjct: 70 KDAGYETMTVVQEATLPIILKGKDVLAKAKTGTGKTVAFLLPSIEVVVKSPP 121
>At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical to
RNA helicase [Arabidopsis thaliana] GI:3776023; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 563
Score = 38.7 bits (86), Expect = 0.003
Identities = 18/55 (32%), Positives = 31/55 (56%)
Frame = +2
Query: 446 KDNGLQRTDAYSSSRLADSYVGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRR 610
+D G + + L GK+++ A+TG+GKT+A++LP+I + PP R
Sbjct: 96 EDAGFKTMTVVQEATLPLILQGKDILAKAKTGTGKTVAFLLPSIEAVIKAPPASR 150
>At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 633
Score = 38.3 bits (85), Expect = 0.005
Identities = 18/42 (42%), Positives = 26/42 (61%)
Frame = +2
Query: 509 GKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGSRLLW 634
G++L+ AQTGSGKT A+ P I I ++R GSR ++
Sbjct: 196 GRDLMACAQTGSGKTAAFCFPIISGIMKDQHVQRPRGSRTVY 237
Score = 35.1 bits (77), Expect = 0.043
Identities = 20/90 (22%), Positives = 38/90 (42%), Gaps = 3/90 (3%)
Frame = +3
Query: 255 WD--SVSLQPFNKNFYDPHPTVLKRSPYEVE-EYRNNHEVTVSGVEVHNPIQYFEEANFP 425
WD + PF + +P P ++ + + + + SG V P+ F E +
Sbjct: 108 WDRREREVNPFENDDSEPEPAFTEQDNTVINFDAYEDIPIETSGDNVPPPVNTFAEIDLG 167
Query: 426 DYVQQGVKTMGYKEPTPIQAQGWPIAMSER 515
+ + ++ Y +PTP+Q PI + R
Sbjct: 168 EALNLNIRRCKYVKPTPVQRHAIPILLEGR 197
Score = 28.7 bits (61), Expect = 3.7
Identities = 11/16 (68%), Positives = 15/16 (93%)
Frame = +1
Query: 622 PIALVLAPTRELAQQI 669
P+A++L+PTRELA QI
Sbjct: 238 PLAVILSPTRELASQI 253
>At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative
Length = 739
Score = 37.9 bits (84), Expect = 0.006
Identities = 15/43 (34%), Positives = 31/43 (72%)
Frame = +2
Query: 467 TDAYSSSRLADSYVGKNLVGVAQTGSGKTLAYILPAIVHINNQ 595
TD S++ + + G++++G A+TGSGKTLA+++P + ++ +
Sbjct: 95 TDVQSAA-IPHALCGRDILGAARTGSGKTLAFVIPILEKLHRE 136
>At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)
similar to RNA helicase GB:CAA09204 from [Arabidopsis
thaliana]; identical to cDNA DEAD box RNA helicase, RH13
GI:3776002
Length = 832
Score = 37.9 bits (84), Expect = 0.006
Identities = 15/26 (57%), Positives = 22/26 (84%)
Frame = +2
Query: 500 SYVGKNLVGVAQTGSGKTLAYILPAI 577
+Y GK+++G A+TGSGKTLA+ LP +
Sbjct: 225 AYQGKDVIGAAETGSGKTLAFGLPIL 250
>At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)
identical to cDNA DEAD box RNA helicase, RH16 GI:3776006
Length = 626
Score = 37.5 bits (83), Expect = 0.008
Identities = 17/41 (41%), Positives = 26/41 (63%)
Frame = +2
Query: 455 GLQRTDAYSSSRLADSYVGKNLVGVAQTGSGKTLAYILPAI 577
G+++ S + GK++V A+TGSGKTLAY+LP +
Sbjct: 65 GIEKPTLIQQSAIPYILEGKDVVARAKTGSGKTLAYLLPLL 105
>At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 713
Score = 36.7 bits (81), Expect = 0.014
Identities = 12/25 (48%), Positives = 21/25 (84%)
Frame = +2
Query: 512 KNLVGVAQTGSGKTLAYILPAIVHI 586
+++V +A+TGSGKTL Y++P +H+
Sbjct: 267 RDIVAIAKTGSGKTLGYLIPGFMHL 291
Score = 35.9 bits (79), Expect = 0.025
Identities = 14/24 (58%), Positives = 17/24 (70%)
Frame = +3
Query: 444 VKTMGYKEPTPIQAQGWPIAMSER 515
V + G+ P+PIQAQ WPIAM R
Sbjct: 244 VYSAGFSAPSPIQAQSWPIAMQNR 267
Score = 31.1 bits (67), Expect = 0.70
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +3
Query: 339 EEYRNNHEVTVSGVEVHNPIQYFEEANFPD 428
E Y HE+TVSG +V P+ FE P+
Sbjct: 141 EAYCRKHEITVSGGQVPPPLMSFEATGLPN 170
Score = 28.7 bits (61), Expect = 3.7
Identities = 13/17 (76%), Positives = 14/17 (82%)
Frame = +1
Query: 622 PIALVLAPTRELAQQIQ 672
P LVL+PTRELA QIQ
Sbjct: 302 PTILVLSPTRELATQIQ 318
>At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)
probable replication protein A1, Oryza sativa,
EMBL:AF009179
Length = 456
Score = 36.3 bits (80), Expect = 0.019
Identities = 16/45 (35%), Positives = 27/45 (60%)
Frame = +2
Query: 443 CKDNGLQRTDAYSSSRLADSYVGKNLVGVAQTGSGKTLAYILPAI 577
C+ G + + L + GK+++G+AQTGSGKT A+ +P +
Sbjct: 24 CERLGWKNPSKIQAEALPFALEGKDVIGLAQTGSGKTGAFAIPIL 68
>At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 36.3 bits (80), Expect = 0.019
Identities = 16/51 (31%), Positives = 26/51 (50%)
Frame = +3
Query: 363 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSER 515
V SG +V P+ F + + D + ++ Y PTP+Q PI ++ER
Sbjct: 139 VETSGGDVPPPVNTFADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAER 189
Score = 35.5 bits (78), Expect = 0.033
Identities = 17/41 (41%), Positives = 24/41 (58%)
Frame = +2
Query: 512 KNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGSRLLW 634
++L+ AQTGSGKT A+ P I I + R GSR ++
Sbjct: 189 RDLMACAQTGSGKTAAFCFPIISGIMKDQHVERPRGSRAVY 229
>At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 36.3 bits (80), Expect = 0.019
Identities = 16/51 (31%), Positives = 26/51 (50%)
Frame = +3
Query: 363 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSER 515
V SG +V P+ F + + D + ++ Y PTP+Q PI ++ER
Sbjct: 139 VETSGGDVPPPVNTFADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAER 189
Score = 35.5 bits (78), Expect = 0.033
Identities = 17/41 (41%), Positives = 24/41 (58%)
Frame = +2
Query: 512 KNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGSRLLW 634
++L+ AQTGSGKT A+ P I I + R GSR ++
Sbjct: 189 RDLMACAQTGSGKTAAFCFPIISGIMKDQHVERPRGSRAVY 229
>At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)
similar to RNA helicase GI:3776015 from [Arabidopsis
thaliana]; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00270: DEAD/DEAH box
helicase; matches EST OAO811-2
Length = 581
Score = 35.5 bits (78), Expect = 0.033
Identities = 16/49 (32%), Positives = 26/49 (53%)
Frame = +2
Query: 446 KDNGLQRTDAYSSSRLADSYVGKNLVGVAQTGSGKTLAYILPAIVHINN 592
+D+G R + + GK+++ A+TGSGKT Y+ P I + N
Sbjct: 96 RDSGFDRPSLTQAVCIPSILSGKDVIVAAETGSGKTHGYLAPIIDQLTN 144
>At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 646
Score = 35.1 bits (77), Expect = 0.043
Identities = 18/39 (46%), Positives = 22/39 (56%)
Frame = +2
Query: 509 GKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGSR 625
G++L+ AQTGSGKT A+ P I I I R G R
Sbjct: 183 GRDLMACAQTGSGKTAAFCFPIISGIMKDQHIERPRGVR 221
Score = 32.7 bits (71), Expect = 0.23
Identities = 23/90 (25%), Positives = 36/90 (40%), Gaps = 3/90 (3%)
Frame = +3
Query: 255 WD--SVSLQPF-NKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFP 425
WD PF N DP + + E Y + + SG V P+ F E +
Sbjct: 96 WDRRDTETNPFGNDGNADPAVNEQENTVINFEAYEDI-PIETSGDNVPPPVNTFAEIDLG 154
Query: 426 DYVQQGVKTMGYKEPTPIQAQGWPIAMSER 515
+ + ++ Y +PTP+Q PI + R
Sbjct: 155 EALNLNIQRCKYVKPTPVQRNAIPILAAGR 184
Score = 27.5 bits (58), Expect = 8.6
Identities = 11/16 (68%), Positives = 15/16 (93%)
Frame = +1
Query: 622 PIALVLAPTRELAQQI 669
P+A++L+PTRELA QI
Sbjct: 225 PLAVILSPTRELACQI 240
>At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9)
similar to RNA helicases GI:3775995, GI:3775987
[Arabidopsis thaliana]; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 610
Score = 35.1 bits (77), Expect = 0.043
Identities = 15/44 (34%), Positives = 28/44 (63%)
Frame = +2
Query: 446 KDNGLQRTDAYSSSRLADSYVGKNLVGVAQTGSGKTLAYILPAI 577
K G+++ + L + G++++G A+TG+GKTLA+ +P I
Sbjct: 132 KGRGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPII 175
Score = 29.1 bits (62), Expect = 2.8
Identities = 12/18 (66%), Positives = 16/18 (88%)
Frame = +1
Query: 622 PIALVLAPTRELAQQIQQ 675
P LVLAPTRELA+Q+++
Sbjct: 191 PQCLVLAPTRELARQVEK 208
>At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 505
Score = 34.3 bits (75), Expect = 0.075
Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
Frame = +3
Query: 324 SPYEVEEYRNNHEVTVSGV--EVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWP 497
S ++ + R ++ V G V P+ F P + ++T GY PTPIQ Q P
Sbjct: 83 SSHDAQLLRRKLDIHVQGQGSAVPPPVLTFTSCGLPPKLLLNLETAGYDFPTPIQMQAIP 142
Query: 498 IAMSERI*LA 527
A++ + LA
Sbjct: 143 AALTGKSLLA 152
Score = 30.7 bits (66), Expect = 0.93
Identities = 12/23 (52%), Positives = 18/23 (78%)
Frame = +2
Query: 509 GKNLVGVAQTGSGKTLAYILPAI 577
GK+L+ A TGSGKT ++++P I
Sbjct: 147 GKSLLASADTGSGKTASFLVPII 169
Score = 28.7 bits (61), Expect = 3.7
Identities = 11/17 (64%), Positives = 15/17 (88%)
Frame = +1
Query: 622 PIALVLAPTRELAQQIQ 672
P+A+VLAPTREL Q++
Sbjct: 187 PLAMVLAPTRELCVQVE 203
>At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)
identical to GB:CAA09207, contains a DEAD/DEAH box
family ATP-dependent helicas signature; identical to
cDNA DEAD box RNA helicase, RH17 GI:3776008
Length = 609
Score = 34.3 bits (75), Expect = 0.075
Identities = 15/39 (38%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Frame = +2
Query: 509 GKNLVGVAQTGSGKTLAYILPAIVHI-NNQPPIRRGDGS 622
G++++ A TG+GKT+AY+ P I H+ + P + R G+
Sbjct: 67 GRDVLVNAPTGTGKTIAYLAPLIHHLQGHSPKVDRSHGT 105
>At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar to
RNA helicases GI:3775995, GI:3775987 from [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 616
Score = 33.5 bits (73), Expect = 0.13
Identities = 14/41 (34%), Positives = 27/41 (65%)
Frame = +2
Query: 455 GLQRTDAYSSSRLADSYVGKNLVGVAQTGSGKTLAYILPAI 577
G+++ + L + G++++G A+TG+GKTLA+ +P I
Sbjct: 123 GIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPII 163
Score = 31.1 bits (67), Expect = 0.70
Identities = 12/18 (66%), Positives = 17/18 (94%)
Frame = +1
Query: 622 PIALVLAPTRELAQQIQQ 675
P+ LVLAPTRELA+Q+++
Sbjct: 179 PLCLVLAPTRELARQVEK 196
>At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar to
RNA helicase RH25 [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 845
Score = 33.5 bits (73), Expect = 0.13
Identities = 14/42 (33%), Positives = 28/42 (66%)
Frame = +2
Query: 452 NGLQRTDAYSSSRLADSYVGKNLVGVAQTGSGKTLAYILPAI 577
+G+ + + L++ GK+ + A+TG+GK++A++LPAI
Sbjct: 393 SGIVKMTRVQDATLSECLDGKDALVKAKTGTGKSMAFLLPAI 434
>At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative similar
to RNA helicase GI:3776027 from [Arabidopsis thaliana]
Length = 513
Score = 33.5 bits (73), Expect = 0.13
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = +3
Query: 405 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMS 509
FE N V +K GYK PTPIQ + P+ +S
Sbjct: 30 FESLNLGPNVFNAIKKKGYKVPTPIQRKTMPLILS 64
Score = 31.9 bits (69), Expect = 0.40
Identities = 12/31 (38%), Positives = 21/31 (67%)
Frame = +2
Query: 509 GKNLVGVAQTGSGKTLAYILPAIVHINNQPP 601
G ++V +A+TGSGKT A+++P + + P
Sbjct: 65 GVDVVAMARTGSGKTAAFLIPMLEKLKQHVP 95
>At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar to
RNA helicase (RH25) [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 798
Score = 33.5 bits (73), Expect = 0.13
Identities = 14/42 (33%), Positives = 28/42 (66%)
Frame = +2
Query: 452 NGLQRTDAYSSSRLADSYVGKNLVGVAQTGSGKTLAYILPAI 577
+G+ + + L++ GK+ + A+TG+GK++A++LPAI
Sbjct: 346 SGILKMTRVQDATLSECLDGKDALVKAKTGTGKSMAFLLPAI 387
>At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:3775987; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain, PF00098: Zinc knuckle
Length = 747
Score = 32.7 bits (71), Expect = 0.23
Identities = 18/54 (33%), Positives = 31/54 (57%)
Frame = +2
Query: 491 LADSYVGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGSRLLWSWRLPE 652
L + G++++ A+TG+GKTLA+ +P I + + GD + S RLP+
Sbjct: 133 LVPALQGRDIIARAKTGTGKTLAFGIPIIKRLTEE----AGDYTAFRRSGRLPK 182
Score = 29.9 bits (64), Expect = 1.6
Identities = 14/27 (51%), Positives = 20/27 (74%)
Frame = +1
Query: 595 TAYSER*WVPIALVLAPTRELAQQIQQ 675
TA+ +P LVLAPTRELA+Q+++
Sbjct: 172 TAFRRSGRLPKFLVLAPTRELAKQVEK 198
>At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 781
Score = 32.7 bits (71), Expect = 0.23
Identities = 13/29 (44%), Positives = 20/29 (68%)
Frame = +2
Query: 509 GKNLVGVAQTGSGKTLAYILPAIVHINNQ 595
GK+ + Q+GSGKTLAY++P I + +
Sbjct: 411 GKSCIIADQSGSGKTLAYLVPVIQRLREE 439
>At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicase GB:6321111 from (S.
cerevisiae)
Length = 558
Score = 31.9 bits (69), Expect = 0.40
Identities = 18/33 (54%), Positives = 23/33 (69%), Gaps = 3/33 (9%)
Frame = +2
Query: 512 KNLVGVAQTGSGKTLAYILPAIVHI---NNQPP 601
K++V A TGSGKTLA++LP I I N+ PP
Sbjct: 54 KDVVVDAATGSGKTLAFLLPFIEIIRRSNSYPP 86
>At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 465
Score = 31.9 bits (69), Expect = 0.40
Identities = 18/33 (54%), Positives = 23/33 (69%), Gaps = 3/33 (9%)
Frame = +2
Query: 512 KNLVGVAQTGSGKTLAYILPAIVHI---NNQPP 601
K++V A TGSGKTLA++LP I I N+ PP
Sbjct: 55 KDVVVDAATGSGKTLAFLLPFIEIIRRSNSYPP 87
>At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative
EUKARYOTIC INITIATION FACTOR 4A-II (EIF-4A-II), Homo
sapiens, SWISSPROT:IF42_HUMAN
Length = 472
Score = 31.5 bits (68), Expect = 0.53
Identities = 15/31 (48%), Positives = 20/31 (64%)
Frame = +2
Query: 503 YVGKNLVGVAQTGSGKTLAYILPAIVHINNQ 595
+ G++ + AQTGSGKTL Y+L IN Q
Sbjct: 111 FTGRDCILHAQTGSGKTLTYLLLIFSLINPQ 141
>At3g13920.1 68416.m01758 eukaryotic translation initiation factor
4A-1 / eIF-4A-1 eIF-4A-1 gi:15293046, gi:15450485;
contains Pfam profile PF00270: DEAD/DEAH box helicase;
contains Pfam profile PF00271: Helicase conserved
C-terminal domain
Length = 412
Score = 31.1 bits (67), Expect = 0.70
Identities = 14/16 (87%), Positives = 16/16 (100%)
Frame = +1
Query: 628 ALVLAPTRELAQQIQQ 675
ALVLAPTRELAQQI++
Sbjct: 110 ALVLAPTRELAQQIEK 125
>At1g72730.1 68414.m08410 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative similar to Eukaryotic
initiation factor 4A-10 GB:P41382 [Nicotiana tabacum];
identical to (putative) RNA helicase GB:CAA09211
[Arabidopsis thaliana] (Nucleic Acids Res. 27 (2),
628-636 (1999))
Length = 414
Score = 31.1 bits (67), Expect = 0.70
Identities = 14/16 (87%), Positives = 16/16 (100%)
Frame = +1
Query: 628 ALVLAPTRELAQQIQQ 675
ALVLAPTRELAQQI++
Sbjct: 112 ALVLAPTRELAQQIEK 127
>At1g54270.1 68414.m06187 eukaryotic translation initiation factor
4A-2 / eIF-4A-2 similar to eukaryotic translation
initiation factor 4A GI:19696 from [Nicotiana
plumbaginifolia]
Length = 412
Score = 31.1 bits (67), Expect = 0.70
Identities = 14/16 (87%), Positives = 16/16 (100%)
Frame = +1
Query: 628 ALVLAPTRELAQQIQQ 675
ALVLAPTRELAQQI++
Sbjct: 110 ALVLAPTRELAQQIEK 125
>At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA
helicase -Mus musculus,PIR2:I84741
Length = 621
Score = 30.7 bits (66), Expect = 0.93
Identities = 13/22 (59%), Positives = 18/22 (81%)
Frame = +2
Query: 512 KNLVGVAQTGSGKTLAYILPAI 577
K++V + TGSGKTLAY+LP +
Sbjct: 150 KSVVLGSHTGSGKTLAYLLPIV 171
>At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 368
Score = 30.7 bits (66), Expect = 0.93
Identities = 12/23 (52%), Positives = 18/23 (78%)
Frame = +2
Query: 509 GKNLVGVAQTGSGKTLAYILPAI 577
GK+L+ A TGSGKT ++++P I
Sbjct: 10 GKSLLASADTGSGKTASFLVPII 32
Score = 28.7 bits (61), Expect = 3.7
Identities = 11/17 (64%), Positives = 15/17 (88%)
Frame = +1
Query: 622 PIALVLAPTRELAQQIQ 672
P+A+VLAPTREL Q++
Sbjct: 50 PLAMVLAPTRELCVQVE 66
>At1g51380.1 68414.m05780 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative
Length = 392
Score = 30.3 bits (65), Expect = 1.2
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +3
Query: 393 PIQYFEEANFPDYVQQGVKTMGYKEPTPIQ 482
PI+ F++ D V +GV GYK+P+ IQ
Sbjct: 20 PIKSFDDMGMNDKVLRGVYDYGYKKPSEIQ 49
>At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /
pentatricopeptide (PPR) repeat-containing protein
contains Pfam profiles: PF00271 helicase conserved
C-terminal domain, PF01535 PPR repeat, PF00270:
DEAD/DEAH box helicase
Length = 1145
Score = 30.3 bits (65), Expect = 1.2
Identities = 14/26 (53%), Positives = 18/26 (69%)
Frame = +2
Query: 509 GKNLVGVAQTGSGKTLAYILPAIVHI 586
G + V + TGSGKTLAY+LP + I
Sbjct: 147 GHDAVIQSYTGSGKTLAYLLPILSEI 172
>At3g49500.1 68416.m05410 RNA-dependent RNA polymerase (SDE1)
identical to RNA-dependent RNA polymerase [Arabidopsis
thaliana] gi|8248473|gb|AAF74208
Length = 1196
Score = 29.9 bits (64), Expect = 1.6
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +2
Query: 188 LEDLEDLVGKKNSLEVRTCVAQMGFCFTPTF 280
+ D++ +GK V C A+MG CF+ T+
Sbjct: 530 VSDIKTWMGKFKDKNVAKCAARMGLCFSSTY 560
>At5g08110.1 68418.m00946 DEAD/DEAH box helicase, putative several
putative ATP-dependent helicases
Length = 1058
Score = 29.1 bits (62), Expect = 2.8
Identities = 15/52 (28%), Positives = 25/52 (48%)
Frame = +2
Query: 416 KFS*LCATRCKDNGLQRTDAYSSSRLADSYVGKNLVGVAQTGSGKTLAYILP 571
K S + K GL ++ + ++ + GKN+ T SGK+L Y +P
Sbjct: 377 KLSETTKSALKRIGLNTLYSHQAEAISAALAGKNVAVATMTSSGKSLCYNVP 428
>At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 29.1 bits (62), Expect = 2.8
Identities = 16/49 (32%), Positives = 25/49 (51%)
Frame = +3
Query: 405 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSERI*LA*LKRVPAK 551
FE+ + G+ G++ P+PIQ + PIA++ R LA K K
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILARAKNGTGK 181
>At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 29.1 bits (62), Expect = 2.8
Identities = 16/49 (32%), Positives = 25/49 (51%)
Frame = +3
Query: 405 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSERI*LA*LKRVPAK 551
FE+ + G+ G++ P+PIQ + PIA++ R LA K K
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILARAKNGTGK 181
>At5g25520.2 68418.m03037 transcription elongation factor-related
contains weak similarity to transcription elongation
factors
Length = 997
Score = 28.3 bits (60), Expect = 4.9
Identities = 17/45 (37%), Positives = 24/45 (53%)
Frame = +2
Query: 443 CKDNGLQRTDAYSSSRLADSYVGKNLVGVAQTGSGKTLAYILPAI 577
CK NG+ ++ S +A SYV VG A+ SG L Y+ P +
Sbjct: 722 CK-NGISQSQRDSLIEVAKSYVADQRVGYAEPTSGVEL-YLCPTL 764
>At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative similar
to D-E-A-D box protein [Drosophila melanogaster]
GI:499204; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 512
Score = 28.3 bits (60), Expect = 4.9
Identities = 14/24 (58%), Positives = 17/24 (70%)
Frame = +2
Query: 536 TGSGKTLAYILPAIVHINNQPPIR 607
TGSGKTL+Y LP IV + P+R
Sbjct: 71 TGSGKTLSYALP-IVQLLASRPVR 93
>At2g33420.1 68415.m04096 expressed protein
Length = 1039
Score = 28.3 bits (60), Expect = 4.9
Identities = 12/17 (70%), Positives = 13/17 (76%)
Frame = +3
Query: 27 SKRIHSLNKHLQLNPKI 77
S IHSLNK L LNP+I
Sbjct: 789 SSHIHSLNKTLSLNPRI 805
>At2g01830.3 68415.m00115 histidine kinase (AHK4) (WOL) identical to
histidine kinase AHK4 [Arabidopsis thaliana]
gi|13537200|dbj|BAB40776; contains Pfam profiles
PF03924: CHASE domain, PF02518: ATPase, histidine
kinase-, DNA gyrase B-, and HSP90-like domain protein,
PF00512: His Kinase A (phosphoacceptor) domain,
PF00072: Response regulator receiver domain
Length = 1057
Score = 28.3 bits (60), Expect = 4.9
Identities = 18/74 (24%), Positives = 32/74 (43%), Gaps = 1/74 (1%)
Frame = +3
Query: 294 YDPHPTVLKRSPYEVEEYRNNHE-VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEP 470
Y +P+ + + + R E +SGV + FE F +KTM EP
Sbjct: 172 YHKNPSAIDQETFAEYTARTAFERPLLSGVAYAEKVVNFEREMFERQHNWVIKTMDRGEP 231
Query: 471 TPIQAQGWPIAMSE 512
+P++ + P+ S+
Sbjct: 232 SPVRDEYAPVIFSQ 245
>At2g01830.2 68415.m00116 histidine kinase (AHK4) (WOL) identical to
histidine kinase AHK4 [Arabidopsis thaliana]
gi|13537200|dbj|BAB40776; contains Pfam profiles
PF03924: CHASE domain, PF02518: ATPase, histidine
kinase-, DNA gyrase B-, and HSP90-like domain protein,
PF00512: His Kinase A (phosphoacceptor) domain,
PF00072: Response regulator receiver domain
Length = 1080
Score = 28.3 bits (60), Expect = 4.9
Identities = 18/74 (24%), Positives = 32/74 (43%), Gaps = 1/74 (1%)
Frame = +3
Query: 294 YDPHPTVLKRSPYEVEEYRNNHE-VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEP 470
Y +P+ + + + R E +SGV + FE F +KTM EP
Sbjct: 195 YHKNPSAIDQETFAEYTARTAFERPLLSGVAYAEKVVNFEREMFERQHNWVIKTMDRGEP 254
Query: 471 TPIQAQGWPIAMSE 512
+P++ + P+ S+
Sbjct: 255 SPVRDEYAPVIFSQ 268
>At2g01830.1 68415.m00114 histidine kinase (AHK4) (WOL) identical to
histidine kinase AHK4 [Arabidopsis thaliana]
gi|13537200|dbj|BAB40776; contains Pfam profiles
PF03924: CHASE domain, PF02518: ATPase, histidine
kinase-, DNA gyrase B-, and HSP90-like domain protein,
PF00512: His Kinase A (phosphoacceptor) domain,
PF00072: Response regulator receiver domain
Length = 1057
Score = 28.3 bits (60), Expect = 4.9
Identities = 18/74 (24%), Positives = 32/74 (43%), Gaps = 1/74 (1%)
Frame = +3
Query: 294 YDPHPTVLKRSPYEVEEYRNNHE-VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEP 470
Y +P+ + + + R E +SGV + FE F +KTM EP
Sbjct: 172 YHKNPSAIDQETFAEYTARTAFERPLLSGVAYAEKVVNFEREMFERQHNWVIKTMDRGEP 231
Query: 471 TPIQAQGWPIAMSE 512
+P++ + P+ S+
Sbjct: 232 SPVRDEYAPVIFSQ 245
>At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative
Length = 427
Score = 27.9 bits (59), Expect = 6.5
Identities = 11/50 (22%), Positives = 24/50 (48%)
Frame = +2
Query: 449 DNGLQRTDAYSSSRLADSYVGKNLVGVAQTGSGKTLAYILPAIVHINNQP 598
D+G + + + +G +++ A++G GKT ++L + I P
Sbjct: 63 DSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPSP 112
>At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 427
Score = 27.9 bits (59), Expect = 6.5
Identities = 11/50 (22%), Positives = 24/50 (48%)
Frame = +2
Query: 449 DNGLQRTDAYSSSRLADSYVGKNLVGVAQTGSGKTLAYILPAIVHINNQP 598
D+G + + + +G +++ A++G GKT ++L + I P
Sbjct: 63 DSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPSP 112
>At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18)
Length = 593
Score = 27.9 bits (59), Expect = 6.5
Identities = 11/22 (50%), Positives = 17/22 (77%)
Frame = +2
Query: 512 KNLVGVAQTGSGKTLAYILPAI 577
K++ A TGSGKTLA+++P +
Sbjct: 54 KDVAVDAATGSGKTLAFVVPLV 75
>At1g04470.1 68414.m00438 expressed protein EST gb|ATTS5672 comes
from this gene
Length = 1035
Score = 27.9 bits (59), Expect = 6.5
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = +3
Query: 27 SKRIHSLNKHLQLNPKI 77
S ++HSLNK L LNP++
Sbjct: 786 SSQLHSLNKSLSLNPRV 802
>At5g27680.1 68418.m03319 DEAD/DEAH box helicase, putative similar
to WRN (Werner syndrome) protein - Mus musculus,
EMBL:AF241636; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain, PF00627: UBA/TS-N domain
Length = 858
Score = 27.5 bits (58), Expect = 8.6
Identities = 12/42 (28%), Positives = 24/42 (57%)
Frame = +2
Query: 455 GLQRTDAYSSSRLADSYVGKNLVGVAQTGSGKTLAYILPAIV 580
G+ ++ L+ K+ + +A TGSGK+L + +PA++
Sbjct: 165 GISSLRSFQREALSTWVAHKDCLVLAATGSGKSLCFQIPALL 206
>At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 27.5 bits (58), Expect = 8.6
Identities = 11/35 (31%), Positives = 22/35 (62%)
Frame = +3
Query: 405 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMS 509
FE+ + +G+ G+++P+PIQ + PIA++
Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALT 160
>At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 27.5 bits (58), Expect = 8.6
Identities = 11/35 (31%), Positives = 22/35 (62%)
Frame = +3
Query: 405 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMS 509
FE+ + +G+ G+++P+PIQ + PIA++
Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALT 160
>At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative
Length = 528
Score = 27.5 bits (58), Expect = 8.6
Identities = 11/35 (31%), Positives = 22/35 (62%)
Frame = +3
Query: 405 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMS 509
FE+ + +G+ G+++P+PIQ + PIA++
Sbjct: 156 FEDYFLKRDLLRGIYEKGFEKPSPIQEESIPIALT 190
>At2g25460.1 68415.m03049 expressed protein
Length = 423
Score = 27.5 bits (58), Expect = 8.6
Identities = 8/22 (36%), Positives = 14/22 (63%)
Frame = -2
Query: 163 ETNYRRICCLLQIWNHRFHGYY 98
E + R+CC++ WN F+ +Y
Sbjct: 80 EEEFERVCCIVGPWNLSFNVFY 101
>At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to
RNA binding protein GI:18181938 from (Arabidopsis
thaliana); contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
domain 15450911 gb AY054536.1
Length = 360
Score = 27.5 bits (58), Expect = 8.6
Identities = 12/54 (22%), Positives = 26/54 (48%)
Frame = +3
Query: 243 ASPRWDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQY 404
A+ W++ +QP PHPT + +Y N +++ + + +NP+ +
Sbjct: 263 ANVSWNNPIMQPTGFYCAPPHPTPPPTNNLGYIQYMNGFDLSGTNISGYNPLAW 316
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,707,892
Number of Sequences: 28952
Number of extensions: 282013
Number of successful extensions: 955
Number of sequences better than 10.0: 72
Number of HSP's better than 10.0 without gapping: 846
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 955
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1428369392
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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