Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060144.seq
         (671 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1B9.02c |sck1||serine/threonine protein kinase Sck1|Schizosa...    27   2.5  
SPACUNK12.02c |cmk1||calcium/calmodulin-dependent protein kinase...    25   9.9  
SPAC24H6.09 |gef1||RhoGEF Gef1|Schizosaccharomyces pombe|chr 1||...    25   9.9  

>SPAC1B9.02c |sck1||serine/threonine protein kinase
           Sck1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 696

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = +2

Query: 512 QKELRMLANTAPQFISNFITAVTELYVHDLSTKKMPPKNLL 634
           Q E R     A  +I+  + A+  L+ HD+  + + P+N+L
Sbjct: 395 QHEGRFPEQRAKFYIAELVLALEHLHKHDIIYRDLKPENIL 435


>SPACUNK12.02c |cmk1||calcium/calmodulin-dependent protein kinase
           Cmk1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 335

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 16/45 (35%), Positives = 22/45 (48%)
 Frame = -2

Query: 385 DTAMLARILSTFNLL*LSIPPNSDKNIVFFVVSLLQEDKYSHKIL 251
           D  ++ R L   NLL  S  PNSD  I  F +S   ED   + ++
Sbjct: 147 DNGIVHRDLKPENLLYRSKDPNSDLLIADFGLSHFYEDSQYYMLM 191


>SPAC24H6.09 |gef1||RhoGEF Gef1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 753

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
 Frame = +3

Query: 243 TTHRI--LCEYLSSCNNETTKNTIFLSLFGGMESQRRLKVLSILASMAVSASSTPVLLA 413
           T+ R+  L  +++  ++ET+ N     L G    ++  +    LASM  S SST  LL+
Sbjct: 188 TSRRVSGLGSFMAQNSSETSSNRTSAYLPGSSTDEQEKRSSVTLASMPSSHSSTASLLS 246


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,718,881
Number of Sequences: 5004
Number of extensions: 52934
Number of successful extensions: 98
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)