Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060144.seq
         (671 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_05_0148 - 22729469-22730116,22730215-22730589                       29   4.5  
03_05_0441 + 24350026-24350081,24350186-24351011,24351088-243511...    29   4.5  
07_01_0889 + 7426680-7427396,7428073-7428222,7429296-7429601           28   7.8  

>05_05_0148 - 22729469-22730116,22730215-22730589
          Length = 340

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
 Frame = -2

Query: 487 SRIRFSASCRDCGDEQPVCWSQTPTASNTG-VLEADTAMLARILSTFNLL*LSIPPN 320
           S   FS S       QP+    + T+S++G +LE  +  L R+ ST +L  +++PP+
Sbjct: 76  SNAAFSYSSAPACQLQPLPPVSSSTSSSSGDLLEFSSGTLRRVFSTGDLQAMNVPPS 132


>03_05_0441 +
           24350026-24350081,24350186-24351011,24351088-24351189,
           24351278-24351343,24351418-24351483,24351594-24351800,
           24351925-24352086
          Length = 494

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +1

Query: 478 LSVITSTLIQKPERTPNAGKYCSSIYF*FHYCSN 579
           L V   +++  PE  PN G    S YF F++ S+
Sbjct: 461 LHVPNGSIMPPPENAPNTGSGMGSFYFYFYFSSD 494


>07_01_0889 + 7426680-7427396,7428073-7428222,7429296-7429601
          Length = 390

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = +3

Query: 324 GGMESQRRLKVLSILASMAVSASSTPVLLAVGVWLQQT-GCSSPQSL 461
           GG   Q + KV SI+  +     +TPV +AVGV +      SSP +L
Sbjct: 284 GGCIVQAKFKVRSIVTMVLFFCLTTPVGIAVGVGISSVYNESSPTAL 330


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,096,714
Number of Sequences: 37544
Number of extensions: 322130
Number of successful extensions: 618
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 611
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 617
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1703141568
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)