Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060144.seq
         (671 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68320-3|CAA92707.3|  477|Caenorhabditis elegans Hypothetical pr...    28   6.9  
AF043706-2|AAB97604.2|  730|Caenorhabditis elegans Hypothetical ...    28   6.9  
Z81502-2|CAB04106.2|  720|Caenorhabditis elegans Hypothetical pr...    27   9.2  
Z68106-5|CAA92129.1|  557|Caenorhabditis elegans Hypothetical pr...    27   9.2  

>Z68320-3|CAA92707.3|  477|Caenorhabditis elegans Hypothetical
           protein W07A12.6 protein.
          Length = 477

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 18/65 (27%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
 Frame = +3

Query: 228 FIARTTTHRILCEYLSSCNNETTKNTIFLSLFGGMESQRRLKVLSILASM--AVSASSTP 401
           F+A  T + IL EY +     T  NT++ ++F    S   + +  ++A+M      SSTP
Sbjct: 343 FVAIATIYAILPEYWNPNAGNTLYNTVYTAVF---RSVFAMAISGMIAAMYFKEGCSSTP 399

Query: 402 VLLAV 416
           ++ ++
Sbjct: 400 LVFSI 404


>AF043706-2|AAB97604.2|  730|Caenorhabditis elegans Hypothetical
           protein ZC123.1 protein.
          Length = 730

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -2

Query: 457 DCGDEQPVCWSQTPTASNTG 398
           DCG  +P C+ Q PT  N G
Sbjct: 177 DCGCGRPCCYYQNPTCCNQG 196


>Z81502-2|CAB04106.2|  720|Caenorhabditis elegans Hypothetical
           protein F14B6.2 protein.
          Length = 720

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 10/36 (27%), Positives = 18/36 (50%)
 Frame = +1

Query: 271 CPLAIMRLQRIQYSCRCLVVWKVRED*RY*VSWLAW 378
           CPL+++ +  +   C C+  W +RE   +     AW
Sbjct: 41  CPLSVVLVLIVLIKCLCISFWIIREHETFDFRCAAW 76


>Z68106-5|CAA92129.1|  557|Caenorhabditis elegans Hypothetical
           protein F41E7.6 protein.
          Length = 557

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 17/55 (30%), Positives = 25/55 (45%)
 Frame = +3

Query: 186 E*SSRRQRTGGRPQFIARTTTHRILCEYLSSCNNETTKNTIFLSLFGGMESQRRL 350
           E +S R    GR + +   TT   + +YL++C N  T  T+ L  F    S   L
Sbjct: 413 ETASTRMFYHGRTETVRSLTTD--MEKYLTACENSATNETLKLLFFDAYNSHNTL 465


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,207,870
Number of Sequences: 27780
Number of extensions: 300006
Number of successful extensions: 567
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 563
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 567
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1518563232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)