Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060144.seq
         (671 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g19440.1 68415.m02269 glycosyl hydrolase family 17 protein si...    28   6.5  
At1g53900.1 68414.m06136 eukaryotic translation initiation facto...    27   8.6  
At1g53880.1 68414.m06133 eukaryotic translation initiation facto...    27   8.6  

>At2g19440.1 68415.m02269 glycosyl hydrolase family 17 protein
           similar to elicitor inducible chitinase Nt-SubE76
           GI:11071974 from [Nicotiana tabacum]; an isoform
           contains a non-consensus GA-AG intron
          Length = 478

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 14/28 (50%), Positives = 18/28 (64%)
 Frame = +3

Query: 357 LSILASMAVSASSTPVLLAVGVWLQQTG 440
           + I+AS A S SS+ VLL  GVW   +G
Sbjct: 446 IQIVASTASSFSSSLVLLIAGVWFLLSG 473


>At1g53900.1 68414.m06136 eukaryotic translation initiation factor
           2B family protein / eIF-2B family protein similar to
           SP|Q64270 Translation initiation factor eIF-2B alpha
           subunit {Rattus norvegicus}; contains Pfam profiles
           PF04525: Protein of unknown function (DUF567), PF01008:
           Initiation factor 2 subunit family
          Length = 644

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +3

Query: 318 LFGGMESQRRLKVLSILASMAVSASSTPVLLAVG 419
           L GG + + RLKVLS L  + +S  +T + L  G
Sbjct: 376 LSGGSKGKDRLKVLSFLDDVFMSWDTTSISLTAG 409


>At1g53880.1 68414.m06133 eukaryotic translation initiation factor
           2B family protein / eIF-2B family protein similar to
           SP|Q64270 Translation initiation factor eIF-2B alpha
           subunit {Rattus norvegicus}; contains Pfam profiles
           PF04525: Protein of unknown function (DUF567), PF01008:
           Initiation factor 2 subunit family
          Length = 637

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +3

Query: 318 LFGGMESQRRLKVLSILASMAVSASSTPVLLAVG 419
           L GG + + RLKVLS L  + +S  +T + L  G
Sbjct: 376 LSGGSKGKDRLKVLSFLDDVFMSWDTTSISLTAG 409


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,046,588
Number of Sequences: 28952
Number of extensions: 270982
Number of successful extensions: 549
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 537
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 549
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1422784080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)