Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060142.seq
         (681 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_06_0226 + 26561673-26562908                                         28   7.9  
02_04_0518 + 23601355-23602498,23603481-23603779                       28   7.9  

>05_06_0226 + 26561673-26562908
          Length = 411

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 14/41 (34%), Positives = 25/41 (60%)
 Frame = +1

Query: 88  HQAIAFRCIGDSLYSQNEQDFISRMNPQKDLQDLMEESSDY 210
           H  IAF  +GD L+S+ EQ  +  ++P + ++DL+    D+
Sbjct: 179 HHQIAFWHMGDRLFSEAEQ--MVWLSPLEQVEDLLYLDEDF 217


>02_04_0518 + 23601355-23602498,23603481-23603779
          Length = 480

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
 Frame = +1

Query: 112 IGDSLYSQNEQDFISRMNPQKDL--QDLMEESSDYWXXLLRXYFNEDVITLLVPRALR 279
           +GD    + E D +++MNP      +   EE  +    LL  +   +++ LLV   LR
Sbjct: 28  VGDEAVEEEEDDDVTKMNPPPATAGEREEEEEEEGIEGLLEPFTRNELLDLLVEACLR 85


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,631,451
Number of Sequences: 37544
Number of extensions: 255448
Number of successful extensions: 790
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 764
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 789
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1721314888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)