Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060142.seq
         (681 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_31609| Best HMM Match : Peptidase_M16_C (HMM E-Value=5.7e-08)       58   5e-09
SB_39733| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.86 
SB_6450| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.5  

>SB_31609| Best HMM Match : Peptidase_M16_C (HMM E-Value=5.7e-08)
          Length = 456

 Score = 58.4 bits (135), Expect = 5e-09
 Identities = 38/159 (23%), Positives = 64/159 (40%), Gaps = 1/159 (0%)
 Frame = +1

Query: 1   GTRPIDMVXXXXXXXXXXXXSAAXXEAKPHQAIAFRCIGDSLYSQNEQDFISRMNPQKDL 180
           G+  +DM             +    E  PH   A   I D LYS + ++   R +   +L
Sbjct: 223 GSEALDMTRMATVIHRVILDTKDKIENDPHDTFADLVIYDFLYSHSSKELEKRADFIHEL 282

Query: 181 QDLMEESSDYWXXLLRXYFNEDVITLLVPR-ALRCRKKWPKRRNGG*KTNELC*XEKGLA 357
             L  E   YW   L+ YF +  + +++   + +  +                  E GL 
Sbjct: 283 TSLQSEGEQYWKEFLKSYFVKAPLVMVIGEPSKQLMEDMAAAEKARVAAQREALGETGLK 342

Query: 358 EKAKQXXDAIQFNELPPPAGTLAAVPVPSCDSLKCHSIS 474
           EKA++   A Q NE+ PP   +A + +PS  S+  H ++
Sbjct: 343 EKAERLKKASQENEVAPPPEVVARIAIPSTSSILFHPLT 381


>SB_39733| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2839

 Score = 31.1 bits (67), Expect = 0.86
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = +3

Query: 279  MQEKMAEEEKRRIEDQRALLX*ERSRRKSQAXXR 380
            + EK  EEE+RR+E++R L   E   R+ +A  R
Sbjct: 1569 LMEKDVEEERRRLEEERRLCEKEEMEREREAERR 1602


>SB_6450| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 692

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 15/29 (51%), Positives = 21/29 (72%)
 Frame = +3

Query: 276 EMQEKMAEEEKRRIEDQRALLX*ERSRRK 362
           +M+EK AEE KR+ E++R L   ER R+K
Sbjct: 87  QMREKQAEERKRKNEERR-LAFEERKRQK 114


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,138,910
Number of Sequences: 59808
Number of extensions: 259122
Number of successful extensions: 605
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 542
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 600
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1757375282
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)