Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060142.seq
         (681 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC117313-1|AAI17314.1| 1235|Homo sapiens AP1GBP1 protein protein.      33   0.94 
BC090930-1|AAH90930.1| 1224|Homo sapiens AP1GBP1 protein protein.      33   0.94 
AK126988-1|BAC86778.1|  628|Homo sapiens protein ( Homo sapiens ...    33   0.94 
AF169548-1|AAD49732.1| 1314|Homo sapiens gamma-synergin protein.       33   0.94 
U72671-1|AAC50959.1|  924|Homo sapiens telencephalin precursor p...    33   1.2  
BC030132-1|AAH30132.2|  812|Homo sapiens ICAM5 protein protein.        33   1.2  
BC026338-1|AAH26338.1|  924|Homo sapiens intercellular adhesion ...    33   1.2  
AF082802-1|AAC97931.1|  924|Homo sapiens telencephalin protein.        33   1.2  
AB208804-1|BAD92041.1| 1284|Homo sapiens Adapter-related protein...    31   2.9  
U91930-1|AAD03777.1| 1112|Homo sapiens AP-3 complex delta subuni...    31   3.8  
AC005545-2|AAC34214.1| 1079|Homo sapiens AP-3 complex delta subu...    31   3.8  
M83216-1|AAA58419.1|  793|Homo sapiens caldesmon protein.              31   5.0  

>BC117313-1|AAI17314.1| 1235|Homo sapiens AP1GBP1 protein protein.
          Length = 1235

 Score = 33.1 bits (72), Expect = 0.94
 Identities = 14/29 (48%), Positives = 22/29 (75%)
 Frame = +3

Query: 276 EMQEKMAEEEKRRIEDQRALLX*ERSRRK 362
           +MQ++ AEE+++R E Q+ LL  ER RR+
Sbjct: 113 DMQKQFAEEQQKRFEQQQKLLEEERKRRQ 141


>BC090930-1|AAH90930.1| 1224|Homo sapiens AP1GBP1 protein protein.
          Length = 1224

 Score = 33.1 bits (72), Expect = 0.94
 Identities = 14/29 (48%), Positives = 22/29 (75%)
 Frame = +3

Query: 276 EMQEKMAEEEKRRIEDQRALLX*ERSRRK 362
           +MQ++ AEE+++R E Q+ LL  ER RR+
Sbjct: 114 DMQKQFAEEQQKRFEQQQKLLEEERKRRQ 142


>AK126988-1|BAC86778.1|  628|Homo sapiens protein ( Homo sapiens
           cDNA FLJ45043 fis, clone BRAWH3021012, highly  similar
           to Homo sapiens AP1 gamma subunit binding protein 1
           (AP1GBP1). ).
          Length = 628

 Score = 33.1 bits (72), Expect = 0.94
 Identities = 14/29 (48%), Positives = 22/29 (75%)
 Frame = +3

Query: 276 EMQEKMAEEEKRRIEDQRALLX*ERSRRK 362
           +MQ++ AEE+++R E Q+ LL  ER RR+
Sbjct: 147 DMQKQFAEEQQKRFEQQQKLLEEERKRRQ 175


>AF169548-1|AAD49732.1| 1314|Homo sapiens gamma-synergin protein.
          Length = 1314

 Score = 33.1 bits (72), Expect = 0.94
 Identities = 14/29 (48%), Positives = 22/29 (75%)
 Frame = +3

Query: 276 EMQEKMAEEEKRRIEDQRALLX*ERSRRK 362
           +MQ++ AEE+++R E Q+ LL  ER RR+
Sbjct: 114 DMQKQFAEEQQKRFEQQQKLLEEERKRRQ 142


>U72671-1|AAC50959.1|  924|Homo sapiens telencephalin precursor
           protein.
          Length = 924

 Score = 32.7 bits (71), Expect = 1.2
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +1

Query: 421 LAAVPVPSCDSLKCHSISTWIXGAEACPHSISTRCRSTPGL 543
           ++A   P  D   C S  TW+ GAEA   + + R R +PG+
Sbjct: 660 VSAESPPEMDESTCPSHQTWLEGAEASALACAARGRPSPGV 700


>BC030132-1|AAH30132.2|  812|Homo sapiens ICAM5 protein protein.
          Length = 812

 Score = 32.7 bits (71), Expect = 1.2
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +1

Query: 421 LAAVPVPSCDSLKCHSISTWIXGAEACPHSISTRCRSTPGL 543
           ++A   P  D   C S  TW+ GAEA   + + R R +PG+
Sbjct: 548 VSAESPPEMDESTCPSHQTWLEGAEASALACAARGRPSPGV 588


>BC026338-1|AAH26338.1|  924|Homo sapiens intercellular adhesion
           molecule 5, telencephalin protein.
          Length = 924

 Score = 32.7 bits (71), Expect = 1.2
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +1

Query: 421 LAAVPVPSCDSLKCHSISTWIXGAEACPHSISTRCRSTPGL 543
           ++A   P  D   C S  TW+ GAEA   + + R R +PG+
Sbjct: 660 VSAESPPEMDESTCPSHQTWLEGAEASALACAARGRPSPGV 700


>AF082802-1|AAC97931.1|  924|Homo sapiens telencephalin protein.
          Length = 924

 Score = 32.7 bits (71), Expect = 1.2
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +1

Query: 421 LAAVPVPSCDSLKCHSISTWIXGAEACPHSISTRCRSTPGL 543
           ++A   P  D   C S  TW+ GAEA   + + R R +PG+
Sbjct: 660 VSAESPPEMDESTCPSHQTWLEGAEASALACAARGRPSPGV 700


>AB208804-1|BAD92041.1| 1284|Homo sapiens Adapter-related protein
            complex 3 delta 1 subunit variant protein.
          Length = 1284

 Score = 31.5 bits (68), Expect = 2.9
 Identities = 20/65 (30%), Positives = 30/65 (46%)
 Frame = +1

Query: 283  RKKWPKRRNGG*KTNELC*XEKGLAEKAKQXXDAIQFNELPPPAGTLAAVPVPSCDSLKC 462
            + K PK++    K  E    +K   EK  +  D    +  PPPA   A  PVPS   L  
Sbjct: 909  KSKKPKKKEKKHKEKERDKEKKKEKEKKAEDLD-FWLSTTPPPAPAPAPAPVPSTGELSV 967

Query: 463  HSIST 477
            ++++T
Sbjct: 968  NTVTT 972


>U91930-1|AAD03777.1| 1112|Homo sapiens AP-3 complex delta subunit
           protein.
          Length = 1112

 Score = 31.1 bits (67), Expect = 3.8
 Identities = 23/71 (32%), Positives = 30/71 (42%)
 Frame = +1

Query: 283 RKKWPKRRNGG*KTNELC*XEKGLAEKAKQXXDAIQFNELPPPAGTLAAVPVPSCDSLKC 462
           + K PK++    K  E    +K   EK  +  D    +  PPPA   A  PVPS D  +C
Sbjct: 749 KSKKPKKKEKKHKEKERDKEKKKEKEKKAEDLD-FWLSTTPPPAPAPAPAPVPSTD--EC 805

Query: 463 HSISTWIXGAE 495
               T   G E
Sbjct: 806 EDAKTEAQGEE 816


>AC005545-2|AAC34214.1| 1079|Homo sapiens AP-3 complex delta
           subunit, partial CDS protein.
          Length = 1079

 Score = 31.1 bits (67), Expect = 3.8
 Identities = 23/71 (32%), Positives = 30/71 (42%)
 Frame = +1

Query: 283 RKKWPKRRNGG*KTNELC*XEKGLAEKAKQXXDAIQFNELPPPAGTLAAVPVPSCDSLKC 462
           + K PK++    K  E    +K   EK  +  D    +  PPPA   A  PVPS D  +C
Sbjct: 716 KSKKPKKKEKKHKEKERDKEKKKEKEKKAEDLD-FWLSTTPPPAPAPAPAPVPSTD--EC 772

Query: 463 HSISTWIXGAE 495
               T   G E
Sbjct: 773 EDAKTEAQGEE 783


>M83216-1|AAA58419.1|  793|Homo sapiens caldesmon protein.
          Length = 793

 Score = 30.7 bits (66), Expect = 5.0
 Identities = 16/33 (48%), Positives = 18/33 (54%)
 Frame = +3

Query: 261 GSPSIEMQEKMAEEEKRRIEDQRALLX*ERSRR 359
           GS  I   EKM EE+K R E +RA L  E   R
Sbjct: 247 GSDEISHHEKMEEEDKERAEAERARLEAEERER 279


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 77,340,055
Number of Sequences: 237096
Number of extensions: 1363248
Number of successful extensions: 3504
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 3268
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3495
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7727256732
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)