Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060142.seq
         (681 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00048-11|AAB53833.1|  995|Caenorhabditis elegans Hypothetical p...    36   0.027
Z81558-5|CAB04542.2|  543|Caenorhabditis elegans Hypothetical pr...    28   7.1  
Z81459-2|CAB03828.2|  543|Caenorhabditis elegans Hypothetical pr...    28   7.1  
AC024843-5|AAK70666.3|  740|Caenorhabditis elegans Hypothetical ...    28   7.1  

>U00048-11|AAB53833.1|  995|Caenorhabditis elegans Hypothetical
           protein C05D11.1 protein.
          Length = 995

 Score = 35.9 bits (79), Expect = 0.027
 Identities = 45/182 (24%), Positives = 74/182 (40%), Gaps = 7/182 (3%)
 Frame = +1

Query: 76  EAKPHQAIAFRCIGDSLY-SQNEQDFISRMNPQKDLQDLMEESSDYWXXLLRXYFNEDVI 252
           E    + I    IG  L+ +++E+ F  R N    L+ L  E + YW  L+  YF     
Sbjct: 390 ETNAPKDIMSHIIGHQLFDNEDEELFKKRTNEIDFLKKLKSEPASYWVQLVNKYFTAPSA 449

Query: 253 TLL-VP-RALRCRKKWPKRRNGG*KTNELC*XEKGLAEKAKQXXDAIQFNEL-PPPAGTL 423
           T++ VP   L  +    + +    +  +L   +KGL E  K    AI  N    P A  L
Sbjct: 450 TVIGVPNEELVDKIAEEEEKRIAAQCEKL--GKKGLEEAGKSLEAAILENTANHPSAELL 507

Query: 424 AAVPVPSCDSLKCHSISTWIXGAEACPHSISTRCRSTP---GLHNLKTNFVYINIIMXTS 594
             + V   ++     + +    + +     ST     P    LHN  T FV I  ++ +S
Sbjct: 508 DQLIVKDLEAFDRFPVQSLTSNSPSLTPQQSTFLAQFPFHANLHNCPTKFVEIFFLLDSS 567

Query: 595 SV 600
           ++
Sbjct: 568 NL 569



 Score = 28.7 bits (61), Expect = 4.1
 Identities = 11/24 (45%), Positives = 19/24 (79%)
 Frame = +3

Query: 255 IVGSPSIEMQEKMAEEEKRRIEDQ 326
           ++G P+ E+ +K+AEEE++RI  Q
Sbjct: 451 VIGVPNEELVDKIAEEEEKRIAAQ 474


>Z81558-5|CAB04542.2|  543|Caenorhabditis elegans Hypothetical
           protein F59D12.4 protein.
          Length = 543

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = -3

Query: 214 TSSLTILPLNLEDLFEDSYEI*NPVHSVSTESLRC 110
           TS  TI+ L  ++LF+  + I NP +S++ +   C
Sbjct: 132 TSMKTIVELFFDELFQVMFSIANPFYSITNDQRVC 166


>Z81459-2|CAB03828.2|  543|Caenorhabditis elegans Hypothetical
           protein F59D12.4 protein.
          Length = 543

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = -3

Query: 214 TSSLTILPLNLEDLFEDSYEI*NPVHSVSTESLRC 110
           TS  TI+ L  ++LF+  + I NP +S++ +   C
Sbjct: 132 TSMKTIVELFFDELFQVMFSIANPFYSITNDQRVC 166


>AC024843-5|AAK70666.3|  740|Caenorhabditis elegans Hypothetical
           protein Y61A9LA.8 protein.
          Length = 740

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 13/30 (43%), Positives = 21/30 (70%)
 Frame = +3

Query: 282 QEKMAEEEKRRIEDQRALLX*ERSRRKSQA 371
           +EK AEEEKRR E ++ +   +R R +S++
Sbjct: 139 REKRAEEEKRREEKRKEIQRSKRRRTRSRS 168


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,812,729
Number of Sequences: 27780
Number of extensions: 197893
Number of successful extensions: 575
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 549
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 574
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1550199966
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)