Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060141.seq
         (678 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q6CEB3 Cluster: Yarrowia lipolytica chromosome B of str...    33   4.8  
UniRef50_Q1LJ28 Cluster: SmpA/OmlA; n=3; Cupriavidus|Rep: SmpA/O...    33   8.4  

>UniRef50_Q6CEB3 Cluster: Yarrowia lipolytica chromosome B of strain
           CLIB122 of Yarrowia lipolytica; n=1; Yarrowia
           lipolytica|Rep: Yarrowia lipolytica chromosome B of
           strain CLIB122 of Yarrowia lipolytica - Yarrowia
           lipolytica (Candida lipolytica)
          Length = 871

 Score = 33.5 bits (73), Expect = 4.8
 Identities = 19/63 (30%), Positives = 29/63 (46%)
 Frame = +3

Query: 381 EPSRQIESSGRPSQYRSPSSLPVAAPGVLGYSTGSELGCCSRPI*XYFRTNTSTWNRCRD 560
           EP R +E    P    S +SLPV+AP      T    G  +       + +TS++N+  +
Sbjct: 595 EPYRPMEREATPQSQPSQNSLPVSAPSQCQSQTSIHSGSAAFKRPSMRQNSTSSFNQAAE 654

Query: 561 CIT 569
           C T
Sbjct: 655 CPT 657


>UniRef50_Q1LJ28 Cluster: SmpA/OmlA; n=3; Cupriavidus|Rep: SmpA/OmlA
           - Ralstonia metallidurans (strain CH34 / ATCC 43123 /
           DSM 2839)
          Length = 258

 Score = 32.7 bits (71), Expect = 8.4
 Identities = 16/59 (27%), Positives = 28/59 (47%)
 Frame = +3

Query: 312 GKEATAVYSTIICADHYKEARLTEPSRQIESSGRPSQYRSPSSLPVAAPGVLGYSTGSE 488
           G E  + Y  I   D  K A+  +   +I   G P+   +P+++P +AP  +  +  SE
Sbjct: 163 GNELPSEYELIAEIDGMKAAQKNQTPGKIVFGGEPAPASAPAAMPASAPAAMPVAAASE 221


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 643,034,610
Number of Sequences: 1657284
Number of extensions: 13259408
Number of successful extensions: 35727
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 32882
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35468
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 52479343733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)