Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060141.seq
         (678 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase ...    24   1.3  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    24   1.3  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    24   1.3  
U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           23   2.3  
EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B pro...    22   5.3  
S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Triboliu...    21   7.0  
AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein pr...    21   9.3  

>AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase
           protein.
          Length = 677

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -3

Query: 100 FHCVA*NMVMLFLRFSSNFNDLNIASTRV 14
           F+C   ++  LF  FS+ F D NI  T V
Sbjct: 75  FYCQEGSVDFLFDNFSAAFQDHNIEITEV 103


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -3

Query: 100 FHCVA*NMVMLFLRFSSNFNDLNIASTRV 14
           F+C   ++  LF  FS+ F D NI  T V
Sbjct: 308 FYCQEGSVDFLFDNFSAAFQDHNIEITEV 336


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -3

Query: 100 FHCVA*NMVMLFLRFSSNFNDLNIASTRV 14
           F+C   ++  LF  FS+ F D NI  T V
Sbjct: 308 FYCQEGSVDFLFDNFSAAFQDHNIEITEV 336


>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -1

Query: 222 PRSAPNIYGPSSPTYPARP 166
           PR+ PN   PS+ T   RP
Sbjct: 30  PRNVPNFAAPSTSTAVQRP 48


>EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B
           protein.
          Length = 279

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = +3

Query: 312 GKEATAVYSTIICADHYKEARLTEPSRQIESSGRP 416
           GK+   V +   CAD YK     E  +++E+   P
Sbjct: 219 GKKCDWVRNVPECADWYKGRLTDEQLKELENPPTP 253



 Score = 21.4 bits (43), Expect = 7.0
 Identities = 8/27 (29%), Positives = 14/27 (51%)
 Frame = -3

Query: 169 PPRHTCRRFGLGKINRSGLQDRFFHCV 89
           P +H  R+ G        + D+F++CV
Sbjct: 103 PSQHCPRKHGYFAHEEPHICDKFYYCV 129


>S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Tribolium
           castaneum homeodomainprotein mRNA, complete cds. ).
          Length = 327

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = +3

Query: 405 SGRPSQYRSPSSLPVAAPG 461
           S RPS  RSP +  V  PG
Sbjct: 200 SDRPSSGRSPRTRRVKKPG 218


>AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein
           protein.
          Length = 392

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +3

Query: 399 ESSGRPSQYRSPSS 440
           E+  +PS Y+ PSS
Sbjct: 75  EAQNQPSSYKQPSS 88


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 144,506
Number of Sequences: 336
Number of extensions: 3002
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17697850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)