Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060141.seq
         (678 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|...    28   1.4  
SPBC29A10.05 |exo1|mut2|exonuclease I Exo1|Schizosaccharomyces p...    27   3.3  
SPBC1198.02 |dea2||adenine deaminase Dea2|Schizosaccharomyces po...    26   5.8  
SPBC1271.05c |||zinc finger protein zf-AN1 type|Schizosaccharomy...    25   7.6  

>SPBC1826.01c |mot1||TATA-binding protein associated factor
            Mot1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1953

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 16/48 (33%), Positives = 24/48 (50%)
 Frame = +3

Query: 300  DLGWGKEATAVYSTIICADHYKEARLTEPSRQIESSGRPSQYRSPSSL 443
            D+G GK    +   I+ +DHY   +L E S   + +  PS    PS+L
Sbjct: 1384 DMGLGKTLQTI--CIVASDHYNRQKLFEESGSPKFAHVPSLIVCPSTL 1429


>SPBC29A10.05 |exo1|mut2|exonuclease I Exo1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 571

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = +2

Query: 383 AFEANRKLWSAVSVSQPIKPSSRC 454
           AFE  +KLW     SQ I   SRC
Sbjct: 99  AFELGKKLWDEGKKSQAIMQFSRC 122


>SPBC1198.02 |dea2||adenine deaminase Dea2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 367

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 10/32 (31%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
 Frame = +2

Query: 476 YWVRTRVL-QSADIXLLSYKHFNLEPLQRLHH 568
           Y++   VL +++D   L+Y++F++   Q +HH
Sbjct: 72  YYIAVSVLIEASDFEALAYEYFSIAHSQGVHH 103


>SPBC1271.05c |||zinc finger protein zf-AN1 type|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 215

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 15/66 (22%), Positives = 26/66 (39%)
 Frame = +3

Query: 243 LPIKDYSALSLRCRFSPRSDLGWGKEATAVYSTIICADHYKEARLTEPSRQIESSGRPSQ 422
           +  KDYS  +    FSP +      EA + +          ++ LT P  + E S   + 
Sbjct: 80  IDFKDYSTSAFHLHFSPLTPNHASTEAVSNFKQSSTIPSISKSNLTNPPLESEKSSDKAL 139

Query: 423 YRSPSS 440
              P++
Sbjct: 140 LTRPAT 145


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,547,438
Number of Sequences: 5004
Number of extensions: 50115
Number of successful extensions: 121
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)