Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060141.seq
         (678 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_02_0315 - 14230234-14232771                                         31   0.85 
01_06_0571 - 30333569-30334013,30334149-30334198,30334568-30334852     30   2.0  
09_06_0145 + 21162308-21163666                                         28   7.9  

>06_02_0315 - 14230234-14232771
          Length = 845

 Score = 31.1 bits (67), Expect = 0.85
 Identities = 16/45 (35%), Positives = 22/45 (48%)
 Frame = +3

Query: 378 TEPSRQIESSGRPSQYRSPSSLPVAAPGVLGYSTGSELGCCSRPI 512
           + PS    SSG P+  R  SS  + +PG  G   G+  G  S P+
Sbjct: 26  SRPSTASASSGAPATLRPSSSSKLLSPGRTGGGAGAVAGADSAPV 70


>01_06_0571 - 30333569-30334013,30334149-30334198,30334568-30334852
          Length = 259

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -3

Query: 499 QHPSSDPVEYPRTPGAATGRLDGLRY*DG 413
           + P +DP+E P   GAAT R +   Y +G
Sbjct: 23  RRPFTDPIEIPAPSGAATARREDTEYGEG 51


>09_06_0145 + 21162308-21163666
          Length = 452

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 15/47 (31%), Positives = 22/47 (46%)
 Frame = +3

Query: 306 GWGKEATAVYSTIICADHYKEARLTEPSRQIESSGRPSQYRSPSSLP 446
           G G   TAV   ++C D   ++ LT P  +++  G    Y  PS  P
Sbjct: 367 GEGLAPTAVLKDVLCPDLEVDSWLTFPFYELDFGGGCPTYFMPSYFP 413


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,760,513
Number of Sequences: 37544
Number of extensions: 384862
Number of successful extensions: 1057
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 984
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1053
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1726796312
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)