Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060141.seq
         (678 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58981| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.0  
SB_29828| Best HMM Match : IGFBP (HMM E-Value=6.8)                     29   3.5  
SB_51899| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.6  
SB_44098| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.0  
SB_5835| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.0  

>SB_58981| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 794

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = -1

Query: 651 CVCXRHRVKXIEGESQREKERER 583
           C C R R K  E E +RE+ERER
Sbjct: 202 CRCERQREKERERERERERERER 224


>SB_29828| Best HMM Match : IGFBP (HMM E-Value=6.8)
          Length = 159

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
 Frame = +1

Query: 25  KLY*GH*NW-KKIEEITSPCFTPRSGRSDPEVQICLFCRGRTSYRCV*GARG 177
           KL  G+  W  +   IT  C   +     P ++ C+ CRG TS RC  G  G
Sbjct: 30  KLNPGYVFWYHQAYHITCRCSVGKPVECHPSIK-CILCRGDTSKRCDHGEEG 80


>SB_51899| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 873

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 20/76 (26%), Positives = 31/76 (40%), Gaps = 1/76 (1%)
 Frame = -3

Query: 319 SLPHPRSDLGEN-RHLSESAE*SLMGSALNFIKPAVRS*HLRTVQSHLPRAPPRHTCRRF 143
           S P    D   N RH  +S E  ++   L+ ++P++   H    +S L     R   R+ 
Sbjct: 577 SAPTKTHDFNMNHRHCVQSIETLVVSLQLDIVRPSIMITHNNFDKSGLNEPSNRLNKRKI 636

Query: 142 GLGKINRSGLQDRFFH 95
            L  I   GL  +  H
Sbjct: 637 NLDNIENEGLHRKISH 652


>SB_44098| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 561

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +3

Query: 402 SSGRPSQYRSPSSLPVAAPGVLGYSTGSE 488
           S GRP+    PS LP   PG++ +S  ++
Sbjct: 471 SHGRPTVVPWPSGLPPEVPGIVAHSNAAD 499


>SB_5835| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 875

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 16/59 (27%), Positives = 28/59 (47%)
 Frame = -3

Query: 196 TVQSHLPRAPPRHTCRRFGLGKINRSGLQDRFFHCVA*NMVMLFLRFSSNFNDLNIAST 20
           T+Q  +     ++ CRR  LG+  R G +D     +  N+  L    +  F+ L+ A+T
Sbjct: 43  TIQQAIAETVEKNFCRRMTLGQACRDGRKDCVRKLLRGNLTNLNTLDADGFSPLHYATT 101


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,205,665
Number of Sequences: 59808
Number of extensions: 425953
Number of successful extensions: 939
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 794
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 934
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1745338465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)