Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060141.seq
         (678 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    25   0.66 
DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein ...    25   0.88 
AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein ...    25   0.88 
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   2.7  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    21   8.2  

>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 25.0 bits (52), Expect = 0.66
 Identities = 10/15 (66%), Positives = 10/15 (66%)
 Frame = -1

Query: 219 RSAPNIYGPSSPTYP 175
           RSAPN Y PS P  P
Sbjct: 953 RSAPNFYMPSEPKAP 967


>DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein 1
           protein.
          Length = 116

 Score = 24.6 bits (51), Expect = 0.88
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -2

Query: 347 YDCTVDRGSLFTPPKI 300
           YDC +D GS  TP  +
Sbjct: 46  YDCFIDAGSCLTPDSV 61


>AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein
           protein.
          Length = 116

 Score = 24.6 bits (51), Expect = 0.88
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -2

Query: 347 YDCTVDRGSLFTPPKI 300
           YDC +D GS  TP  +
Sbjct: 46  YDCFIDAGSCLTPDSV 61


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +2

Query: 392 ANRKLWSAVSVSQPIKPSSR 451
           AN  LW  +SVS P  PS++
Sbjct: 752 ANVNLWQPLSVSIPPPPSAQ 771


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = +3

Query: 21  VEAILRSLKLEENRRNNITMFHATQWKKRS 110
           + A++R+    ENRRN+      T + K +
Sbjct: 362 MNAVIRNFNESENRRNSCLGSTETYYSKHN 391


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 176,741
Number of Sequences: 438
Number of extensions: 3738
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20586735
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)