Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060141.seq
         (678 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g10250.1 68418.m01190 phototropic-responsive protein, putativ...    29   2.8  
At3g46080.1 68416.m04986 zinc finger (C2H2 type) family protein ...    29   2.8  
At1g10620.1 68414.m01204 protein kinase family protein contains ...    29   2.8  
At5g12040.2 68418.m01407 carbon-nitrogen hydrolase family protei...    28   4.9  
At5g12040.1 68418.m01408 carbon-nitrogen hydrolase family protei...    28   4.9  
At4g34390.1 68417.m04885 extra-large guanine nucleotide binding ...    28   4.9  
At4g24610.1 68417.m03525 expressed protein                             28   4.9  
At5g56990.1 68418.m07113 expressed protein  ; expression support...    27   8.6  
At3g59290.1 68416.m06609 epsin N-terminal homology (ENTH) domain...    27   8.6  

>At5g10250.1 68418.m01190 phototropic-responsive protein, putative
           similar to root phototropism RPT2 [Arabidopsis thaliana]
           gi|6959488|gb|AAF33112, a signal transducer of
           phototropic response PMID:10662859
          Length = 607

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 21/69 (30%), Positives = 34/69 (49%)
 Frame = +2

Query: 320 GYRGLQYNHMRGSLQGSPANGAFEANRKLWSAVSVSQPIKPSSRCSWCPGILYWVRTRVL 499
           G   LQ++  RG ++ S + G  E    + S VSV   + P S    C  +L  ++T ++
Sbjct: 270 GKNELQFSVNRGRMEESNSLGCQEHKETIESLVSV---LPPQSGAVSCHFLLRMLKTSIV 326

Query: 500 QSADIXLLS 526
            SA   L+S
Sbjct: 327 YSASPALIS 335


>At3g46080.1 68416.m04986 zinc finger (C2H2 type) family protein
           contains zinc finger, C2H2 type, domain, PROSITE:PS00028
          Length = 164

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 23/72 (31%), Positives = 32/72 (44%), Gaps = 2/72 (2%)
 Frame = +1

Query: 277 GADFPRGQILGGVKRLPRSTVQSYARITTRK--PG*RSLRGKSKALVGRLSIAAHQAFQS 450
           G +FP GQ LGG  R  RS   S   + TR   P   ++    K+  G+  +A       
Sbjct: 91  GVEFPMGQALGGHMRRHRSEKASPGTLVTRSFLPETTTVTTLKKSSSGK-RVACLDLDSM 149

Query: 451 LLLVSWDTLLGQ 486
             LV+W   LG+
Sbjct: 150 ESLVNWKLELGR 161


>At1g10620.1 68414.m01204 protein kinase family protein contains
           serine/threonine protein kinases active-site signature,
           PROSITE:PS00108
          Length = 718

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 10/20 (50%), Positives = 16/20 (80%)
 Frame = -1

Query: 195 PSSPTYPARPLDTPVGGSAS 136
           P+SP  P +PLD+P+GG ++
Sbjct: 193 PNSPGNPLQPLDSPLGGESN 212


>At5g12040.2 68418.m01407 carbon-nitrogen hydrolase family protein
           similar to Nit protein 2 [Homo sapiens] GI:9367116;
           contains Pfam profile PF00795: hydrolase,
           carbon-nitrogen family
          Length = 294

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +3

Query: 387 SRQIESSGRPSQYRSPSSLPVAAPGVLGYSTG 482
           S  + SS  P Q R PS+LP+ AP +  ++ G
Sbjct: 60  SSSMASSFNPEQARVPSALPLPAPPLTKFNIG 91


>At5g12040.1 68418.m01408 carbon-nitrogen hydrolase family protein
           similar to Nit protein 2 [Homo sapiens] GI:9367116;
           contains Pfam profile PF00795: hydrolase,
           carbon-nitrogen family
          Length = 369

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +3

Query: 387 SRQIESSGRPSQYRSPSSLPVAAPGVLGYSTG 482
           S  + SS  P Q R PS+LP+ AP +  ++ G
Sbjct: 60  SSSMASSFNPEQARVPSALPLPAPPLTKFNIG 91


>At4g34390.1 68417.m04885 extra-large guanine nucleotide binding
           protein, putative / G-protein, putative similar to
           extra-large G-protein (XLG) [Arabidopsis thaliana]
           GI:3201680; contains Pfam profile PF00503: G-protein
           alpha subunit
          Length = 861

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 13/48 (27%), Positives = 20/48 (41%)
 Frame = +1

Query: 79  CFTPRSGRSDPEVQICLFCRGRTSYRCV*GARGVSGTGRSVDVRSGPR 222
           C+  + G    E ++C+ C  +  + CV  A G    GR      G R
Sbjct: 214 CYRCQLGNRFTEKEVCIVCDAKYCFNCVRRAMGAMPEGRKCQACIGYR 261


>At4g24610.1 68417.m03525 expressed protein 
          Length = 1145

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = +3

Query: 348 CADHYKEARLTEPSRQIESSGRPSQYRSPSSLP 446
           C +  K    T PS   ESSG P Q+  P+ LP
Sbjct: 179 CVESRKTGHFTRPSAASESSGPPDQH--PARLP 209


>At5g56990.1 68418.m07113 expressed protein  ; expression supported
           by MPSS
          Length = 224

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 13/25 (52%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
 Frame = +2

Query: 443 SSRCSWCPGILYWVR--TRVLQSAD 511
           S+   WC GILYWV    R L S+D
Sbjct: 115 SASYRWCAGILYWVTFLARDLASSD 139


>At3g59290.1 68416.m06609 epsin N-terminal homology (ENTH)
           domain-containing protein contains Pfam PF01417: ENTH
           domain. ENTH (Epsin N-terminal homology) domain;
           similar to Af10-protein - Avena fatua, EMBL:U80041
          Length = 1024

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 16/51 (31%), Positives = 21/51 (41%), Gaps = 5/51 (9%)
 Frame = -3

Query: 568 VMQSLQRFQVEVFVRK*XYIGRLQHPSSDP-----VEYPRTPGAATGRLDG 431
           + Q  Q   V  F      +G +  P S P       YP TP A +G+ DG
Sbjct: 694 IPQRTQSGPVAAFGNNNNIVGDMHQPGSTPSSSSQTPYPTTPNAPSGQFDG 744


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,776,026
Number of Sequences: 28952
Number of extensions: 284445
Number of successful extensions: 744
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 721
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 744
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1428369392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)