Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060140.seq
         (686 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    35   0.010
SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual       33   0.029
SPBC428.08c |clr4||histone H3 methyltransferase Clr4|Schizosacch...    30   0.36 
SPBC32H8.02c |nep2|mug120|nedd8 protease Nep2|Schizosaccharomyce...    27   2.5  
SPAC652.01 |||BC10 family protein|Schizosaccharomyces pombe|chr ...    25   7.8  

>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with
           EF hand and WH2 motif |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1794

 Score = 35.1 bits (77), Expect = 0.010
 Identities = 16/28 (57%), Positives = 16/28 (57%)
 Frame = +1

Query: 415 QPTVFKQSQPTGFKQSQPTVFKQSQTFG 498
           QPT F Q QPTGF   QP  F Q Q  G
Sbjct: 126 QPTGFVQPQPTGFMSQQPASFMQPQRTG 153



 Score = 28.3 bits (60), Expect = 1.1
 Identities = 13/26 (50%), Positives = 13/26 (50%)
 Frame = +1

Query: 394 PAVFKQSQPTVFKQSQPTGFKQSQPT 471
           P  F Q QPT F   QP  F Q Q T
Sbjct: 127 PTGFVQPQPTGFMSQQPASFMQPQRT 152



 Score = 27.1 bits (57), Expect = 2.5
 Identities = 14/27 (51%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
 Frame = +1

Query: 394 PAVFKQSQPT-VFKQSQPTGFKQSQPT 471
           P  F Q Q T V    QPTG+ Q+QPT
Sbjct: 208 PTGFVQPQQTGVVMPPQPTGYLQAQPT 234


>SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 706

 Score = 33.5 bits (73), Expect = 0.029
 Identities = 17/30 (56%), Positives = 18/30 (60%)
 Frame = +1

Query: 409 QSQPTVFKQSQPTGFKQSQPTVFKQSQTFG 498
           Q QPT F Q QPTGF + Q T F Q Q  G
Sbjct: 310 QPQPTGFLQQQPTGFIRPQNTGFVQPQYTG 339



 Score = 33.1 bits (72), Expect = 0.039
 Identities = 18/39 (46%), Positives = 20/39 (51%)
 Frame = +1

Query: 382 ISRSPAVFKQSQPTVFKQSQPTGFKQSQPTVFKQSQTFG 498
           +   P  F Q QPT F + Q TGF Q Q T F Q Q  G
Sbjct: 309 VQPQPTGFLQQQPTGFIRPQNTGFVQPQYTGFVQPQHTG 347



 Score = 28.7 bits (61), Expect = 0.83
 Identities = 15/35 (42%), Positives = 17/35 (48%)
 Frame = +1

Query: 403 FKQSQPTVFKQSQPTGFKQSQPTVFKQSQTFGRQE 507
           F Q Q T F Q Q  GF   QPT + Q Q  G  +
Sbjct: 436 FIQPQRTGFVQPQQNGFFNPQPTGYMQPQRTGMMQ 470


>SPBC428.08c |clr4||histone H3 methyltransferase
           Clr4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 490

 Score = 29.9 bits (64), Expect = 0.36
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -1

Query: 488 CDCLNTVGCDCLNPVGCDCL 429
           C+C +  GCD  NP  C+CL
Sbjct: 260 CNCSSLGGCDLNNPSRCECL 279



 Score = 25.8 bits (54), Expect = 5.9
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -1

Query: 467 GCDCLNPVGCDCLKTVGCDCL 405
           GC+C +  GCD      C+CL
Sbjct: 259 GCNCSSLGGCDLNNPSRCECL 279


>SPBC32H8.02c |nep2|mug120|nedd8 protease Nep2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 415

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = +3

Query: 159 PDKFPYHYCLISRTLLINSINTVIVLLVSTVQPHSLTNSIATSQP 293
           P+K    +  I +T  +  + T+  +   + QPHSL  S+ +SQP
Sbjct: 296 PEKDKKIFSKICKTEELLELPTLSAVTSDSAQPHSLPASMPSSQP 340


>SPAC652.01 |||BC10 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 108

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +3

Query: 129 FFALQKSSFLPDKFPYHYCLISRTLLINS 215
           F+ +   S +  K+P  YC+I   LLIN+
Sbjct: 21  FYPIFMLSMIARKYPCPYCMIILGLLINT 49


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,025,067
Number of Sequences: 5004
Number of extensions: 31776
Number of successful extensions: 77
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)