Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060140.seq
(686 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_6824| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.16
SB_23612| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.29
SB_48885| Best HMM Match : DUF741 (HMM E-Value=0.88) 31 0.66
SB_24256| Best HMM Match : Keratin_B2 (HMM E-Value=4.8) 29 2.7
SB_32456| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.1
>SB_6824| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1152
Score = 33.5 bits (73), Expect = 0.16
Identities = 11/41 (26%), Positives = 32/41 (78%)
Frame = +1
Query: 373 LYNISRSPAVFKQSQPTVFKQSQPTGFKQSQPTVFKQSQTF 495
+Y++ + P++++ S+P++++ S+P+ + S+P++F+ S+ F
Sbjct: 488 IYDVGK-PSIYELSKPSIYELSKPSIHELSKPSIFELSKPF 527
Score = 31.9 bits (69), Expect = 0.50
Identities = 10/39 (25%), Positives = 31/39 (79%)
Frame = +1
Query: 373 LYNISRSPAVFKQSQPTVFKQSQPTGFKQSQPTVFKQSQ 489
+Y +S+ P++F+ S+P++++ +P+ ++ S+P++++ S+
Sbjct: 592 MYELSK-PSIFELSKPSIYELLEPSIYELSKPSIYELSK 629
Score = 31.1 bits (67), Expect = 0.87
Identities = 11/39 (28%), Positives = 30/39 (76%)
Frame = +1
Query: 373 LYNISRSPAVFKQSQPTVFKQSQPTGFKQSQPTVFKQSQ 489
+Y +S+ P++++ S+P++ + S+P+ F+ S+P +++ S+
Sbjct: 496 IYELSK-PSIYELSKPSIHELSKPSIFELSKPFIYEVSK 533
Score = 30.7 bits (66), Expect = 1.2
Identities = 9/32 (28%), Positives = 26/32 (81%)
Frame = +1
Query: 394 PAVFKQSQPTVFKQSQPTGFKQSQPTVFKQSQ 489
P++++ S+P++++ S+P ++ S+P++F+ S+
Sbjct: 574 PSIYELSKPSIYELSKPFMYELSKPSIFELSK 605
Score = 30.7 bits (66), Expect = 1.2
Identities = 10/36 (27%), Positives = 29/36 (80%)
Frame = +1
Query: 373 LYNISRSPAVFKQSQPTVFKQSQPTGFKQSQPTVFK 480
+Y +S+ P++++ S+P +++ S+P+ F+ S+P++++
Sbjct: 576 IYELSK-PSIYELSKPFMYELSKPSIFELSKPSIYE 610
Score = 30.7 bits (66), Expect = 1.2
Identities = 9/34 (26%), Positives = 26/34 (76%)
Frame = +1
Query: 394 PAVFKQSQPTVFKQSQPTGFKQSQPTVFKQSQTF 495
P++++ S+P++++ S+P+ ++ S+P ++K + F
Sbjct: 614 PSIYELSKPSIYELSKPSIYELSKPPIYKLIKPF 647
Score = 30.3 bits (65), Expect = 1.5
Identities = 8/34 (23%), Positives = 27/34 (79%)
Frame = +1
Query: 394 PAVFKQSQPTVFKQSQPTGFKQSQPTVFKQSQTF 495
P++++ S+P++++ +P+ ++ S+P++++ S+ F
Sbjct: 558 PSIYELSKPSIYELLEPSIYELSKPSIYELSKPF 591
Score = 30.3 bits (65), Expect = 1.5
Identities = 11/34 (32%), Positives = 26/34 (76%)
Frame = +1
Query: 394 PAVFKQSQPTVFKQSQPTGFKQSQPTVFKQSQTF 495
P++++ S+P+VF+ +P+ + S+P++F+ S+ F
Sbjct: 670 PSIYELSKPSVFELIKPSINELSKPSIFELSKPF 703
Score = 29.9 bits (64), Expect = 2.0
Identities = 10/36 (27%), Positives = 28/36 (77%)
Frame = +1
Query: 373 LYNISRSPAVFKQSQPTVFKQSQPTGFKQSQPTVFK 480
+Y +S+ P++ + S+P++F+ S+P ++ S+P++++
Sbjct: 504 IYELSK-PSIHELSKPSIFELSKPFIYEVSKPSIYE 538
Score = 29.9 bits (64), Expect = 2.0
Identities = 10/39 (25%), Positives = 30/39 (76%)
Frame = +1
Query: 373 LYNISRSPAVFKQSQPTVFKQSQPTGFKQSQPTVFKQSQ 489
+Y +S+ P +++ S+P++F+ S+P+ ++ +P++++ S+
Sbjct: 584 IYELSK-PFMYELSKPSIFELSKPSIYELLEPSIYELSK 621
Score = 29.5 bits (63), Expect = 2.7
Identities = 11/39 (28%), Positives = 27/39 (69%)
Frame = +1
Query: 373 LYNISRSPAVFKQSQPTVFKQSQPTGFKQSQPTVFKQSQ 489
L N R P+V++ S+P++++ S+P + +P++++ S+
Sbjct: 463 LENGFRQPSVYEVSKPSIYEISKPYIYDVGKPSIYELSK 501
Score = 29.5 bits (63), Expect = 2.7
Identities = 10/41 (24%), Positives = 29/41 (70%)
Frame = +1
Query: 373 LYNISRSPAVFKQSQPTVFKQSQPTGFKQSQPTVFKQSQTF 495
+Y +S+ P++++ S+P++++ S+P +K +P +++ + F
Sbjct: 616 IYELSK-PSIYELSKPSIYELSKPPIYKLIKPFIYEVIKPF 655
Score = 29.1 bits (62), Expect = 3.5
Identities = 8/39 (20%), Positives = 31/39 (79%)
Frame = +1
Query: 373 LYNISRSPAVFKQSQPTVFKQSQPTGFKQSQPTVFKQSQ 489
++ +S+ P++++ +P++++ S+P+ ++ S+P++++ S+
Sbjct: 600 IFELSK-PSIYELLEPSIYELSKPSIYELSKPSIYELSK 637
Score = 28.7 bits (61), Expect = 4.7
Identities = 9/39 (23%), Positives = 29/39 (74%)
Frame = +1
Query: 373 LYNISRSPAVFKQSQPTVFKQSQPTGFKQSQPTVFKQSQ 489
+Y +S+ P++++ S+P ++ +P+ ++ S+P++++ S+
Sbjct: 472 VYEVSK-PSIYEISKPYIYDVGKPSIYELSKPSIYELSK 509
Score = 28.7 bits (61), Expect = 4.7
Identities = 9/39 (23%), Positives = 30/39 (76%)
Frame = +1
Query: 373 LYNISRSPAVFKQSQPTVFKQSQPTGFKQSQPTVFKQSQ 489
++ +S+ P++F+ S+P +++ S+P+ ++ +P++++ S+
Sbjct: 512 IHELSK-PSIFELSKPFIYEVSKPSIYELLEPSIYELSK 549
Score = 28.7 bits (61), Expect = 4.7
Identities = 9/39 (23%), Positives = 30/39 (76%)
Frame = +1
Query: 373 LYNISRSPAVFKQSQPTVFKQSQPTGFKQSQPTVFKQSQ 489
+Y +S+ P++++ +P++++ S+P+ ++ S+P +++ S+
Sbjct: 560 IYELSK-PSIYELLEPSIYELSKPSIYELSKPFMYELSK 597
Score = 28.7 bits (61), Expect = 4.7
Identities = 11/38 (28%), Positives = 28/38 (73%)
Frame = +1
Query: 373 LYNISRSPAVFKQSQPTVFKQSQPTGFKQSQPTVFKQS 486
+Y +S+ P+VF+ +P++ + S+P+ F+ S+P +++ +
Sbjct: 672 IYELSK-PSVFELIKPSINELSKPSIFELSKPFIYEDA 708
Score = 28.3 bits (60), Expect = 6.2
Identities = 10/39 (25%), Positives = 28/39 (71%)
Frame = +1
Query: 373 LYNISRSPAVFKQSQPTVFKQSQPTGFKQSQPTVFKQSQ 489
+Y IS+ P ++ +P++++ S+P+ ++ S+P++ + S+
Sbjct: 480 IYEISK-PYIYDVGKPSIYELSKPSIYELSKPSIHELSK 517
Score = 27.9 bits (59), Expect = 8.1
Identities = 9/36 (25%), Positives = 27/36 (75%)
Frame = +1
Query: 373 LYNISRSPAVFKQSQPTVFKQSQPTGFKQSQPTVFK 480
+Y + + P +++ S+P++++ +P+ ++ S+P+VF+
Sbjct: 648 IYEVIK-PFIYEVSKPSIYELLEPSIYELSKPSVFE 682
>SB_23612| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1021
Score = 32.7 bits (71), Expect = 0.29
Identities = 19/49 (38%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Frame = +1
Query: 403 FKQSQPTVFKQSQPTGF-KQSQPTVFKQSQTFGRQERVXSSVSAKTTWQ 546
F Q +P F+Q+Q GF +Q QP+ +Q Q F RQ+R+ ++ + T Q
Sbjct: 706 FDQFRPQ-FQQAQYPGFPQQQQPSQSQQQQFFPRQQRMMTTTAHSPTAQ 753
>SB_48885| Best HMM Match : DUF741 (HMM E-Value=0.88)
Length = 841
Score = 31.5 bits (68), Expect = 0.66
Identities = 15/34 (44%), Positives = 16/34 (47%)
Frame = -1
Query: 485 DCLNTVGCDCLNPVGCDCLKTVGCDCLKTAGLRE 384
DC V DC V DC K V DC K LR+
Sbjct: 225 DCCKEVKYDCCKDVTNDCCKEVKYDCCKDLTLRK 258
Score = 31.5 bits (68), Expect = 0.66
Identities = 15/34 (44%), Positives = 16/34 (47%)
Frame = -1
Query: 485 DCLNTVGCDCLNPVGCDCLKTVGCDCLKTAGLRE 384
DC V DC V DC K V DC K LR+
Sbjct: 380 DCCKKVKYDCCKDVTNDCCKEVKYDCCKDLTLRK 413
Score = 29.5 bits (63), Expect = 2.7
Identities = 13/28 (46%), Positives = 13/28 (46%)
Frame = -1
Query: 485 DCLNTVGCDCLNPVGCDCLKTVGCDCLK 402
DC V DC V DC K V DC K
Sbjct: 276 DCCKEVKYDCCKEVKYDCCKEVKYDCCK 303
Score = 27.9 bits (59), Expect = 8.1
Identities = 12/28 (42%), Positives = 13/28 (46%)
Frame = -1
Query: 485 DCLNTVGCDCLNPVGCDCLKTVGCDCLK 402
DC V DC + DC K V DC K
Sbjct: 161 DCCKEVKYDCCKDLTYDCCKEVQNDCCK 188
Score = 27.9 bits (59), Expect = 8.1
Identities = 12/28 (42%), Positives = 13/28 (46%)
Frame = -1
Query: 485 DCLNTVGCDCLNPVGCDCLKTVGCDCLK 402
DC + DC V DC K V DC K
Sbjct: 169 DCCKDLTYDCCKEVQNDCCKEVKYDCCK 196
Score = 27.9 bits (59), Expect = 8.1
Identities = 12/28 (42%), Positives = 13/28 (46%)
Frame = -1
Query: 485 DCLNTVGCDCLNPVGCDCLKTVGCDCLK 402
DC V DC + DC K V DC K
Sbjct: 209 DCCKEVKYDCCKDLKNDCCKEVKYDCCK 236
Score = 27.9 bits (59), Expect = 8.1
Identities = 12/28 (42%), Positives = 13/28 (46%)
Frame = -1
Query: 485 DCLNTVGCDCLNPVGCDCLKTVGCDCLK 402
DC + DC V DC K V DC K
Sbjct: 268 DCCKDLTNDCCKEVKYDCCKEVKYDCCK 295
Score = 27.9 bits (59), Expect = 8.1
Identities = 12/28 (42%), Positives = 13/28 (46%)
Frame = -1
Query: 485 DCLNTVGCDCLNPVGCDCLKTVGCDCLK 402
DC V DC + DC K V DC K
Sbjct: 316 DCCKEVKYDCCKDLTYDCCKEVQNDCCK 343
Score = 27.9 bits (59), Expect = 8.1
Identities = 12/28 (42%), Positives = 13/28 (46%)
Frame = -1
Query: 485 DCLNTVGCDCLNPVGCDCLKTVGCDCLK 402
DC + DC V DC K V DC K
Sbjct: 324 DCCKDLTYDCCKEVQNDCCKEVKYDCCK 351
Score = 27.9 bits (59), Expect = 8.1
Identities = 12/28 (42%), Positives = 13/28 (46%)
Frame = -1
Query: 485 DCLNTVGCDCLNPVGCDCLKTVGCDCLK 402
DC V DC + DC K V DC K
Sbjct: 364 DCCKEVKYDCCKDLTNDCCKKVKYDCCK 391
>SB_24256| Best HMM Match : Keratin_B2 (HMM E-Value=4.8)
Length = 475
Score = 29.5 bits (63), Expect = 2.7
Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Frame = -1
Query: 563 LAFPIICHVVFADTLLXTRS*-RPNVCDCLNTVGCDCLNPVGCDCLKTVGCDC 408
++ P+I +V ++ TRS RP + DC DC P DC DC
Sbjct: 2 VSIPMIMIIV---VMMVTRSCKRPTLVDCTGPTQVDCTGPTLVDCTGPTLVDC 51
>SB_32456| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 427
Score = 27.9 bits (59), Expect = 8.1
Identities = 13/51 (25%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Frame = +2
Query: 5 TRKSSPMFDI*YTVRTLQIVDYF-IRIVYTVLYALNILLHYQLFCITKKFI 154
T + +F++ Y + + I+ Y+ +I Y + Y I +H++ IT+K++
Sbjct: 284 TTFEADIFNLFYAIVLIFIIGYYPYQIFYILEYTGKISIHWRYLKITRKYL 334
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,326,221
Number of Sequences: 59808
Number of extensions: 247784
Number of successful extensions: 836
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 516
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 804
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1781448916
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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