Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060140.seq
         (686 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF043441-1|AAC05666.1|  231|Anopheles gambiae putative pupal-spe...    25   1.7  
AY578805-1|AAT07310.1|  753|Anopheles gambiae medea protein.           24   5.2  
AY753539-1|AAV28542.1| 3318|Anopheles gambiae SGS2 protein.            23   9.0  

>AF043441-1|AAC05666.1|  231|Anopheles gambiae putative
           pupal-specific cuticular proteinCP2b protein.
          Length = 231

 Score = 25.4 bits (53), Expect = 1.7
 Identities = 12/31 (38%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = +1

Query: 367 H*LYNISRSPAVFKQSQPTVFKQ-SQPTGFK 456
           H + +I  +PA+++ S PT+ K  +QPT  K
Sbjct: 44  HHVGSIHAAPAIYQHSAPTIVKTIAQPTIIK 74


>AY578805-1|AAT07310.1|  753|Anopheles gambiae medea protein.
          Length = 753

 Score = 23.8 bits (49), Expect = 5.2
 Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
 Frame = +1

Query: 409 QSQPT--VFKQSQPTGFKQSQPTVFKQSQTFGRQERVXSSVSAKTTW 543
           Q+QP+    +Q QP   +Q Q     QSQ   +Q++     S   TW
Sbjct: 399 QAQPSQSAAQQYQPQQQQQQQQQQQPQSQQQQQQQQQQQQQSGSATW 445


>AY753539-1|AAV28542.1| 3318|Anopheles gambiae SGS2 protein.
          Length = 3318

 Score = 23.0 bits (47), Expect = 9.0
 Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
 Frame = +3

Query: 159  PDKFPYHYCLISRTLLINSINTVIVLL---VSTVQPHSLTN 272
            P K P+H     RT   +++NT+       +S V PH+ +N
Sbjct: 3069 PTKTPFHIANCFRTNSADNLNTITCYEQHGLSYVFPHNTSN 3109


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 530,712
Number of Sequences: 2352
Number of extensions: 8634
Number of successful extensions: 11
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 69413730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)