Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060140.seq
         (686 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X54664-1|CAA38475.1|  704|Drosophila melanogaster BRcore-NS-Z3 p...    30   2.6  
AL009146-3|CAA15628.1|  702|Drosophila melanogaster EG:17A9.1,FB...    30   2.6  
AE014298-233|AAF45651.2|  702|Drosophila melanogaster CG11491-PA...    30   2.6  
AE014135-30|ABC65827.1| 4056|Drosophila melanogaster CG33978-PA ...    29   4.5  

>X54664-1|CAA38475.1|  704|Drosophila melanogaster BRcore-NS-Z3
           protein.
          Length = 704

 Score = 30.3 bits (65), Expect = 2.6
 Identities = 19/51 (37%), Positives = 22/51 (43%)
 Frame = +3

Query: 234 LLVSTVQPHSLTNSIATSQP*VAKSTPSLPXXXXXXTGCLSAVVALTLQHL 386
           L VS   PHS+T S ATS      S PS P      T  L   +A  +  L
Sbjct: 426 LAVSPQGPHSITRSAATSPTSSTSSPPSPPTALISPTSSLKGSLAAAVYSL 476


>AL009146-3|CAA15628.1|  702|Drosophila melanogaster
           EG:17A9.1,FBgn0000210;br protein.
          Length = 702

 Score = 30.3 bits (65), Expect = 2.6
 Identities = 19/51 (37%), Positives = 22/51 (43%)
 Frame = +3

Query: 234 LLVSTVQPHSLTNSIATSQP*VAKSTPSLPXXXXXXTGCLSAVVALTLQHL 386
           L VS   PHS+T S ATS      S PS P      T  L   +A  +  L
Sbjct: 426 LAVSPQGPHSITRSAATSPTSSTSSPPSPPTALISPTSSLKGSLAAAVYSL 476


>AE014298-233|AAF45651.2|  702|Drosophila melanogaster CG11491-PA,
           isoform A protein.
          Length = 702

 Score = 30.3 bits (65), Expect = 2.6
 Identities = 19/51 (37%), Positives = 22/51 (43%)
 Frame = +3

Query: 234 LLVSTVQPHSLTNSIATSQP*VAKSTPSLPXXXXXXTGCLSAVVALTLQHL 386
           L VS   PHS+T S ATS      S PS P      T  L   +A  +  L
Sbjct: 426 LAVSPQGPHSITRSAATSPTSSTSSPPSPPTALISPTSSLKGSLAAAVYSL 476


>AE014135-30|ABC65827.1| 4056|Drosophila melanogaster CG33978-PA
           protein.
          Length = 4056

 Score = 29.5 bits (63), Expect = 4.5
 Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = +1

Query: 1   RHEKKFAYV*HIIYSTNSTNRRLFY*NSLHCTI-RSQYTTTLSTFLHYKKVH 153
           R + K + + H  Y T+++ RR+ Y    +  + R  +TT L T +H +  H
Sbjct: 37  REDNKISDIFHKKYDTSTSTRRMMYSTYYNFNLSRVLFTTLLFTMMHIETSH 88


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,720,577
Number of Sequences: 53049
Number of extensions: 345983
Number of successful extensions: 863
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 807
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 859
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 3013199100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)