Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060140.seq
         (686 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79756-4|CAB02116.2|  478|Caenorhabditis elegans Hypothetical pr...    27   9.5  
Z70212-8|CAB54284.1|  320|Caenorhabditis elegans Hypothetical pr...    27   9.5  
AF016687-11|ABL01528.1|  646|Caenorhabditis elegans Hypothetical...    27   9.5  

>Z79756-4|CAB02116.2|  478|Caenorhabditis elegans Hypothetical
           protein F53C11.7 protein.
          Length = 478

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = +2

Query: 236 TRKHSSTSQPNEQYRYQPA 292
           TR+ SS SQP++Q+R  PA
Sbjct: 81  TRQPSSQSQPSQQFRQMPA 99


>Z70212-8|CAB54284.1|  320|Caenorhabditis elegans Hypothetical
           protein R04D3.12 protein.
          Length = 320

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
 Frame = +3

Query: 153 FLPDKFPYHYCLISRT--LLINSINTVIVLLVSTVQP 257
           F+P +F Y+YC+I++   L +     VIV L + + P
Sbjct: 254 FIPLEFLYYYCIITKNELLFVEFFFPVIVELPAMIDP 290


>AF016687-11|ABL01528.1|  646|Caenorhabditis elegans Hypothetical
           protein T21D12.7 protein.
          Length = 646

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = -1

Query: 509 RS*RPNVCDCLNTVGCDCLNPVGCDCLKT 423
           R+ +P++CD L   GC    P+G +CLK+
Sbjct: 296 RTGQPHLCDFLKNEGC----PMGFECLKS 320


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,377,389
Number of Sequences: 27780
Number of extensions: 187133
Number of successful extensions: 518
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 482
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 514
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)