Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060139.seq
         (660 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A5.08 |||COPII-coated vesicle component Erp2/3/4 |Schizosa...    51   2e-07
SPCC24B10.17 |emp24||COPII-coated vesicle component Emp24 |Schiz...    46   4e-06
SPAC23H4.03c |erv25||COPII-coated vesicle component Erv25 |Schiz...    31   0.19 
SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|c...    28   1.4  
SPBC16E9.09c |||COPII vesicle coat component Erp5/Erp6|Schizosac...    27   3.2  
SPAC1A6.03c |||phospholipase |Schizosaccharomyces pombe|chr 1|||...    26   4.2  
SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2 |Schizosacch...    26   5.5  
SPAC3C7.04 |||transcription factor |Schizosaccharomyces pombe|ch...    25   7.3  
SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces ...    25   9.7  
SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyce...    25   9.7  

>SPAC17A5.08 |||COPII-coated vesicle component Erp2/3/4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 210

 Score = 50.8 bits (116), Expect = 2e-07
 Identities = 29/148 (19%), Positives = 66/148 (44%), Gaps = 5/148 (3%)
 Frame = +3

Query: 96  LVVTLLNLVSNAYSYTVTVDAHAEECFY-ENVEADTKLGLSFEIAEGGFLDIDV*Y*ALM 272
           + + LL  +++A   T  ++   ++C+Y ++     K   ++ +  GG  D+D    A  
Sbjct: 9   ITLFLLASLASAIELTFKLENQEKQCYYLDSFHTGEKTHFTYAVQSGGSFDVDYMIKAPS 68

Query: 273 ATSFIKQRGSHLVFIHFSAPTAGKYTYCFSNKMSSMTPKVVMFNL----EIGEPQTKSGN 440
             +    +      + F+    G+Y +CF N MS+ T K+V   +    E+  P      
Sbjct: 69  QKTVALGKKRRQADVFFTLEEKGEYEFCFDNHMSTFTDKIVTMEITMENELSLPALTRDE 128

Query: 441 ENEADHNKLEDMIKELATTLRTINTIKS 524
             +   + ++  + E++T L  I+ +++
Sbjct: 129 AKDYKKDSMQSTVLEISTALSEIDRVQN 156


>SPCC24B10.17 |emp24||COPII-coated vesicle component Emp24
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 199

 Score = 46.4 bits (105), Expect = 4e-06
 Identities = 23/96 (23%), Positives = 45/96 (46%)
 Frame = +3

Query: 120 VSNAYSYTVTVDAHAEECFYENVEADTKLGLSFEIAEGGFLDIDV*Y*ALMATSFIKQRG 299
           +S  + + +T+  H  ECFYEN+  + ++ ++++   GG   + +           ++  
Sbjct: 16  ISVVFGHGITLKPHQRECFYENLRNNDQMSVTYQTNVGGDQLVSMSIYNPAGQIMHQEVP 75

Query: 300 SHLVFIHFSAPTAGKYTYCFSNKMSSMTPKVVMFNL 407
           + +    F+    GKY YCF N       K V+FN+
Sbjct: 76  NSMAQYSFTVKNPGKYMYCFYNDALDGESKEVLFNV 111



 Score = 43.2 bits (97), Expect = 3e-05
 Identities = 18/32 (56%), Positives = 21/32 (65%)
 Frame = +2

Query: 497 IKNYKHDQEYMQVRDRIHRSINESTNSRVVMW 592
           I   KH+QEY   R+RIHR+  ESTN RV  W
Sbjct: 139 ISKVKHEQEYFVARERIHRNTAESTNDRVKWW 170


>SPAC23H4.03c |erv25||COPII-coated vesicle component Erv25
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 216

 Score = 30.7 bits (66), Expect = 0.19
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = +2

Query: 494 YIKNYKHDQEYMQVRDRIHRSINESTNSRVVMWVYI 601
           +I+  K    Y+Q R+   R+ NESTN RV  + Y+
Sbjct: 154 FIEEIKGKIYYLQAREARFRNTNESTNERVKNFAYL 189


>SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1316

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -2

Query: 518 DRVYSS*CSSKFFDHVLKFIMVSFIFITRFSLWFSDF 408
           DR+  +   SK    VL+ + +S + +TRFSL+   F
Sbjct: 5   DRILQNRIVSKVIFFVLRSVTLSLVSVTRFSLFLLSF 41


>SPBC16E9.09c |||COPII vesicle coat component
           Erp5/Erp6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 215

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +2

Query: 515 DQEYMQVRDRIHRSINESTNSRVVMWVYI 601
           +Q   + R+   R  +ES NSRVV W  +
Sbjct: 161 EQMLQRSREMTFRDTSESANSRVVRWTIV 189


>SPAC1A6.03c |||phospholipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 624

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 17/37 (45%), Positives = 22/37 (59%)
 Frame = -3

Query: 232 PSAISNDNPNLVSASTFS*KHSSACASTVTV*LYALL 122
           PSA+SN  P ++SAST S   SS  A  +   L+A L
Sbjct: 582 PSAVSNYAPTVLSASTTS-GTSSVRAKPIVFYLFASL 617


>SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -3

Query: 133  YALLTRFNKVTTSHCDILKYFILINV 56
            YA+L   N +T++ CD   Y +L+ V
Sbjct: 1026 YAILNILNLLTSNECDEFDYSVLMKV 1051


>SPAC3C7.04 |||transcription factor |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 783

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = +3

Query: 453 DHNKLEDMIKELATTLRTINT 515
           DH+KL+D +++ A+TL  I T
Sbjct: 723 DHSKLDDDLEKFASTLDPIKT 743


>SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1429

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = -3

Query: 253 TSISKKPPSAISNDNPNLVSA 191
           TSI+++PPS + +   +LV+A
Sbjct: 47  TSIARRPPSTVGSQTGSLVNA 67


>SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1112

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 4/54 (7%)
 Frame = +3

Query: 345 YTYCFSNKMSSMTPKVVMFNLEIGEPQTKSGNEN----EADHNKLEDMIKELAT 494
           Y     ++  SM P+ ++   ++ E +  S +EN    EAD+N  +D+I +LAT
Sbjct: 352 YDVPLPSRSHSMNPRELVA-AKLKEIKENSFSENQQSDEADYNVTDDLILQLAT 404


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,688,201
Number of Sequences: 5004
Number of extensions: 55472
Number of successful extensions: 154
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)