Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060139.seq
         (660 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_1098 - 30395704-30395837,30396644-30396751,30396933-303971...    31   0.81 
07_03_0647 - 20253380-20253505,20253718-20253727,20253864-202539...    28   5.7  
07_03_0642 - 20216944-20217069,20217282-20217291,20217428-202175...    28   5.7  
07_03_0476 - 18547223-18548187,18548743-18549958                       28   7.6  

>03_05_1098 -
           30395704-30395837,30396644-30396751,30396933-30397119,
           30398127-30398330
          Length = 210

 Score = 31.1 bits (67), Expect = 0.81
 Identities = 16/63 (25%), Positives = 27/63 (42%)
 Frame = +3

Query: 321 FSAPTAGKYTYCFSNKMSSMTPKVVMFNLEIGEPQTKSGNENEADHNKLEDMIKELATTL 500
           F AP  G Y +CF N   +  P+ V F + +G    +     +   + +   I EL   L
Sbjct: 90  FKAPRGGMYKFCFHNPYGA--PETVSFYIHVGHIPNEHNLAKDEHLDPINVKIAELKEAL 147

Query: 501 RTI 509
            ++
Sbjct: 148 ESV 150



 Score = 29.5 bits (63), Expect = 2.5
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +2

Query: 515 DQEYMQVRDRIHRSINESTNSRVVMW 592
           +Q+Y++ R+  HR  NEST  RV+ +
Sbjct: 153 EQKYLKAREARHRHTNESTRRRVMFY 178


>07_03_0647 -
           20253380-20253505,20253718-20253727,20253864-20253977,
           20254063-20254382
          Length = 189

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +3

Query: 339 GKYTYCFSNKMSSMTPKVVMFNLEIGEPQTKSGNENE 449
           GK     S  ++S+TP+V +  +  G+PQ K GN  +
Sbjct: 34  GKVKRSDSVPVASITPRVALQTVNGGKPQRKHGNRQQ 70


>07_03_0642 -
           20216944-20217069,20217282-20217291,20217428-20217541,
           20217627-20217946
          Length = 189

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +3

Query: 339 GKYTYCFSNKMSSMTPKVVMFNLEIGEPQTKSGNENE 449
           GK     S  ++S+TP+V +  +  G+PQ K GN  +
Sbjct: 34  GKVKRSDSVPVASITPRVALQTVNGGKPQRKHGNRQQ 70


>07_03_0476 - 18547223-18548187,18548743-18549958
          Length = 726

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -2

Query: 593 PTSPHVNLYFHLLNDGYDHAPAY 525
           PTSP + +YF    D Y+   AY
Sbjct: 113 PTSPRIGMYFETEEDAYEFYKAY 135


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,304,799
Number of Sequences: 37544
Number of extensions: 315991
Number of successful extensions: 662
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 646
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 662
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1655832080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)