Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060139.seq
         (660 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF014940-5|AAB63937.1|  203|Caenorhabditis elegans Suppressor/en...   118   3e-27
AF039713-7|AAB96722.1|  203|Caenorhabditis elegans Hypothetical ...    60   2e-09
Z68316-4|CAA92683.1|  234|Caenorhabditis elegans Hypothetical pr...    46   3e-05
AL117207-7|CAB60397.1|  211|Caenorhabditis elegans Hypothetical ...    30   1.7  
Z69903-7|CAA93776.1| 1607|Caenorhabditis elegans Hypothetical pr...    29   3.9  
Z69660-1|CAA93489.1| 1607|Caenorhabditis elegans Hypothetical pr...    29   3.9  
AL032648-8|CAI46618.1|  365|Caenorhabditis elegans Hypothetical ...    28   5.1  
AL021346-2|CAB63233.1|  419|Caenorhabditis elegans Hypothetical ...    28   6.8  

>AF014940-5|AAB63937.1|  203|Caenorhabditis elegans
           Suppressor/enhancer of lin-12 protein9 protein.
          Length = 203

 Score =  118 bits (285), Expect = 3e-27
 Identities = 62/143 (43%), Positives = 89/143 (62%), Gaps = 4/143 (2%)
 Frame = +3

Query: 93  WLVVTLLNLVSNAYSYTVTVDAHAEECFYENVEADTKLGLSFEIAEGGFLDIDV*Y*ALM 272
           W++  L   V+ A SY + VDA+ E+CF++ + + TK+GL FE+AEGGFLDIDV      
Sbjct: 6   WILAVLF--VTPAASYFIHVDANEEQCFFDRLTSGTKMGLMFEVAEGGFLDIDVKITGPD 63

Query: 273 ATSFIKQRGSHLVFIHFSAPTAGKYTYCFSNKMSSMTPKVVMFNLEIGEPQTK----SGN 440
                K          F+A   G YTYCF NKMS+MTPK VMF +EI EP  +    + N
Sbjct: 64  NKEIYKGERESSGKFTFAAHMDGVYTYCFGNKMSTMTPKAVMFTVEITEPHQQAPGAAAN 123

Query: 441 ENEADHNKLEDMIKELATTLRTI 509
           ++ AD+ KLE+M++EL++ L ++
Sbjct: 124 QDAADNAKLEEMVRELSSALMSV 146



 Score = 58.8 bits (136), Expect = 3e-09
 Identities = 23/38 (60%), Positives = 31/38 (81%)
 Frame = +2

Query: 497 IKNYKHDQEYMQVRDRIHRSINESTNSRVVMWVYIXGF 610
           + + KH+QEYM+VR+R+HR+INE+TNSRVVMW     F
Sbjct: 143 LMSVKHEQEYMEVRERVHRNINENTNSRVVMWAAFEAF 180


>AF039713-7|AAB96722.1|  203|Caenorhabditis elegans Hypothetical
           protein F57B10.5 protein.
          Length = 203

 Score = 59.7 bits (138), Expect = 2e-09
 Identities = 35/141 (24%), Positives = 63/141 (44%), Gaps = 2/141 (1%)
 Frame = +3

Query: 96  LVVTLLNLVSNAYSYTVTVDAHAEECFYENVEADTKLGLSFEIAEGGFLDIDV*Y*ALMA 275
           +V ++L  +  +   T  +  +A +CFYE+++ D      F++  GG  D+D+       
Sbjct: 6   IVSSILVALGLSIELTFELPDNANQCFYEDLKKDVDTVFEFQVVTGGHYDVDLIIEDPNG 65

Query: 276 TSFIKQRGSHLVFIHFSAPTAGKYTYCFSNKMSSMTPKVVMFNLEIGEPQTKSGNENEAD 455
               K        I+F A   G Y  CFSN+ S+ + K+V  + + G+         +  
Sbjct: 66  KVLYKDTKKQYDSINFKAEVEGTYKACFSNEFSTFSHKIVYMDWQFGDQNALHAAVTQGA 125

Query: 456 H--NKLEDMIKELATTLRTIN 512
           H   +LE+    +   LRTI+
Sbjct: 126 HAMTQLENYAVAIGDKLRTID 146


>Z68316-4|CAA92683.1|  234|Caenorhabditis elegans Hypothetical
           protein K08E4.6 protein.
          Length = 234

 Score = 45.6 bits (103), Expect = 3e-05
 Identities = 38/138 (27%), Positives = 68/138 (49%), Gaps = 7/138 (5%)
 Frame = +3

Query: 117 LVSNAYSYTVTVDAHAEECFYENVE-ADTK-LGLSFEIAEGGFLDIDV*Y*ALMATSFIK 290
           ++   Y +TV V A   +CF++ V+ A  K L + +++ +GG  D+++ +  L   + +K
Sbjct: 18  ILCGEYDFTVEVPAGKFQCFFQPVDLAKHKTLEVDYQVIDGG--DLNINFMILHGANILK 75

Query: 291 QR-----GSHLVFIHFSAPTAGKYTYCFSNKMSSMTPKVVMFNLEIGEPQTKSGNENEAD 455
           Q      GSH   I  + P  G Y  CF N  S  + KVV F + + +     GN +EAD
Sbjct: 76  QDQLKVDGSHR--IELNQP--GDYQVCFDNSFSYQSRKVVFFEIFLFDAH---GNLDEAD 128

Query: 456 HNKLEDMIKELATTLRTI 509
            + +     +L+  +  +
Sbjct: 129 LSAMARTDSDLSAKMNEL 146


>AL117207-7|CAB60397.1|  211|Caenorhabditis elegans Hypothetical
           protein Y60A3A.9 protein.
          Length = 211

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +2

Query: 515 DQEYMQVRDRIHRSINESTNSRVVMW 592
           +Q Y + R+   R  +ESTNSRV  W
Sbjct: 157 EQNYQRYREERFRQTSESTNSRVFYW 182


>Z69903-7|CAA93776.1| 1607|Caenorhabditis elegans Hypothetical protein
            F39B1.1 protein.
          Length = 1607

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 18/63 (28%), Positives = 29/63 (46%)
 Frame = +3

Query: 351  YCFSNKMSSMTPKVVMFNLEIGEPQTKSGNENEADHNKLEDMIKELATTLRTINTIKSIC 530
            +C  NK+     +V   N+ +     +S  E E  H KL      +A +L TI+ ++S  
Sbjct: 1357 HCIPNKIYMYKVEVHRKNVAVSSFIYRSFAEFEELHTKLRARFPMMAVSLNTISNLRSNV 1416

Query: 531  RCV 539
            R V
Sbjct: 1417 RAV 1419


>Z69660-1|CAA93489.1| 1607|Caenorhabditis elegans Hypothetical protein
            F39B1.1 protein.
          Length = 1607

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 18/63 (28%), Positives = 29/63 (46%)
 Frame = +3

Query: 351  YCFSNKMSSMTPKVVMFNLEIGEPQTKSGNENEADHNKLEDMIKELATTLRTINTIKSIC 530
            +C  NK+     +V   N+ +     +S  E E  H KL      +A +L TI+ ++S  
Sbjct: 1357 HCIPNKIYMYKVEVHRKNVAVSSFIYRSFAEFEELHTKLRARFPMMAVSLNTISNLRSNV 1416

Query: 531  RCV 539
            R V
Sbjct: 1417 RAV 1419


>AL032648-8|CAI46618.1|  365|Caenorhabditis elegans Hypothetical
           protein Y54G9A.10 protein.
          Length = 365

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 19/66 (28%), Positives = 35/66 (53%), Gaps = 6/66 (9%)
 Frame = -2

Query: 587 SPHVNLYFHLLNDGYDHAPAYTLDRVYSS*CSSKFFDHVLKFIMVSFI------FITRFS 426
           S H NL    +++ Y H   YTL   + +  + K F ++++ +++S I      F T F+
Sbjct: 221 SRHYNLKITRIHEDYAHQSNYTLAARFQAKENVKCF-NMIRMVLISLIGILIFGFTTCFA 279

Query: 425 LWFSDF 408
           L+F+ F
Sbjct: 280 LYFNIF 285


>AL021346-2|CAB63233.1|  419|Caenorhabditis elegans Hypothetical
           protein H37A05.2 protein.
          Length = 419

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 15/50 (30%), Positives = 26/50 (52%)
 Frame = +3

Query: 345 YTYCFSNKMSSMTPKVVMFNLEIGEPQTKSGNENEADHNKLEDMIKELAT 494
           Y  CF   +  M P ++ F++++GE      N NE    K+  +I++L T
Sbjct: 360 YELCFPASVILMLPFILSFSVKLGE------NINEESVEKMAGLIEDLVT 403


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,799,758
Number of Sequences: 27780
Number of extensions: 308892
Number of successful extensions: 775
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 739
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 771
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1476380920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)