Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060138.seq
(686 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 40 3e-04
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 38 0.001
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 38 0.001
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 33 0.051
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 31 0.21
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 30 0.36
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 29 0.48
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 29 0.83
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 28 1.1
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 27 2.5
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 27 2.5
SPBC354.02c |sec61||translocon alpha subunit Sec61|Schizosacchar... 27 2.5
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 26 4.4
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 25 7.8
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 39.9 bits (89), Expect = 3e-04
Identities = 19/42 (45%), Positives = 26/42 (61%)
Frame = +1
Query: 466 EPTLLGIKDMGFITRQRFKPKLYLLCWKGRDLVGAAKTGSGK 591
+PT +K+ FIT + + KGRD++GAAKTGSGK
Sbjct: 48 QPTKSALKNAHFITLTEIQKQCIPSALKGRDILGAAKTGSGK 89
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 38.3 bits (85), Expect = 0.001
Identities = 18/44 (40%), Positives = 26/44 (59%)
Frame = +1
Query: 469 PTLLGIKDMGFITRQRFKPKLYLLCWKGRDLVGAAKTGSGKNTS 600
P L G+ ++GF + + K L G+D+VGAA TGSGK +
Sbjct: 269 PILKGLSNLGFEVPTQIQDKTIPLALLGKDIVGAAVTGSGKTAA 312
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 37.9 bits (84), Expect = 0.001
Identities = 22/53 (41%), Positives = 31/53 (58%)
Frame = +1
Query: 433 QKFTALEGTVCEPTLLGIKDMGFITRQRFKPKLYLLCWKGRDLVGAAKTGSGK 591
+KF+ L+ + E IK+MGF T + + GRD++GAAKTGSGK
Sbjct: 89 EKFSDLQ--LSENIQKAIKEMGFETMTEIQKRSIPPLLAGRDVLGAAKTGSGK 139
Score = 29.9 bits (64), Expect = 0.36
Identities = 17/37 (45%), Positives = 20/37 (54%)
Frame = +2
Query: 575 KLALGKTLAFLIPGYRPYIQT*NFXPRNGYWSHLLSP 685
K GKTLAFLIP + F PRNG ++SP
Sbjct: 134 KTGSGKTLAFLIPTIE-MLYALKFKPRNGTGVIIISP 169
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 32.7 bits (71), Expect = 0.051
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +1
Query: 484 IKDMGFITRQRFKPKLYLLCWKGRDLVGAAKTGSGKNTS 600
+K +GF + + + + GRD+VG + TGSGK S
Sbjct: 137 VKQLGFEAPTPIQQQAWPMAMSGRDMVGISATGSGKTLS 175
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 30.7 bits (66), Expect = 0.21
Identities = 17/42 (40%), Positives = 22/42 (52%)
Frame = +1
Query: 475 LLGIKDMGFITRQRFKPKLYLLCWKGRDLVGAAKTGSGKNTS 600
L I GF + K L +GRD+VG A+TGSGK +
Sbjct: 81 LRAIFKKGFKAPTPIQRKTIPLLLEGRDVVGMARTGSGKTAA 122
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 29.9 bits (64), Expect = 0.36
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = +1
Query: 466 EPTLLGIKDMGFITRQRFKPKLYLLCWKGRDLVGAAKTGSGKNTS 600
E L GI G+ T + + + KGRD++ A++G+GK +
Sbjct: 30 EDLLRGIYAYGYETPSAVQSRAIIQICKGRDVIAQAQSGTGKTAT 74
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 29.5 bits (63), Expect = 0.48
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = +1
Query: 472 TLLGIKDMGFITRQRFKPKLYLLCWKGRDLVGAAKTGSGK 591
T+ I +G+ + + GRD++G AKTGSGK
Sbjct: 429 TISVINSLGYEKPTSIQAQAIPAITSGRDVIGVAKTGSGK 468
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 28.7 bits (61), Expect = 0.83
Identities = 14/23 (60%), Positives = 17/23 (73%)
Frame = +1
Query: 532 YLLCWKGRDLVGAAKTGSGKNTS 600
YLL GRD+VG A+TGSGK +
Sbjct: 198 YLLA--GRDVVGIAETGSGKTVA 218
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 28.3 bits (60), Expect = 1.1
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = +1
Query: 475 LLGIKDMGFITRQRFKPKLYLLCWKGRDLVGAAKTGSGKNTS 600
L+GI + GF + + + GRD++ AK G+GK +
Sbjct: 56 LMGIFEAGFERPSPIQEESIPIALSGRDILARAKNGTGKTAA 97
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 27.1 bits (57), Expect = 2.5
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +1
Query: 538 LCWKGRDLVGAAKTGSGKNTS 600
L +G+DLV A+TGSGK +
Sbjct: 47 LALEGKDLVAQARTGSGKTAA 67
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 27.1 bits (57), Expect = 2.5
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = +1
Query: 547 KGRDLVGAAKTGSGKNTS 600
+GR+ +G AKTGSGK +
Sbjct: 43 EGRNCIGGAKTGSGKTAA 60
>SPBC354.02c |sec61||translocon alpha subunit
Sec61|Schizosaccharomyces pombe|chr 2|||Manual
Length = 479
Score = 27.1 bits (57), Expect = 2.5
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = -1
Query: 581 PVLAAPTRSLPFQQRRYSFGLNLCLVIKPISLIP 480
P +AAP R +PF+Q+ G+ L L+ +S +P
Sbjct: 18 PEIAAPERKVPFKQKMLWTGVTL-LIFLVMSQVP 50
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 26.2 bits (55), Expect = 4.4
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +1
Query: 493 MGFITRQRFKPKLYLLCWKGRDLVGAAKTGSGKNTS 600
+GF T + + + RD++G A+TGSGK +
Sbjct: 64 LGFKTPTPIQQEAIPVVLNKRDVIGLAQTGSGKTAA 99
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 25.4 bits (53), Expect = 7.8
Identities = 10/14 (71%), Positives = 12/14 (85%)
Frame = +1
Query: 550 GRDLVGAAKTGSGK 591
GRDL+ A+TGSGK
Sbjct: 206 GRDLMACAQTGSGK 219
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,143,627
Number of Sequences: 5004
Number of extensions: 35888
Number of successful extensions: 100
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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