Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060138.seq
(686 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0344 - 33276366-33276548,33277044-33277169,33277254-332773... 40 0.002
01_06_1758 - 39681942-39682030,39682115-39682345,39682643-396826... 33 0.21
08_01_0397 - 3509186-3510291,3510322-3512335 32 0.37
01_01_0682 - 5244805-5244919,5246468-5246613,5246813-5246994,524... 32 0.37
08_01_0353 - 3107628-3107774,3108177-3108213,3108248-3109164,310... 32 0.49
11_06_0767 + 27121761-27123335,27123701-27123910,27124843-271249... 31 0.86
08_02_0671 - 19890187-19890295,19891186-19891320,19891551-198919... 31 1.1
07_03_0601 - 19872780-19873099,19873148-19873151,19874196-198743... 30 1.5
02_05_1293 - 35520733-35520963,35521696-35521878,35522040-355222... 30 1.5
01_01_0509 - 3713109-3713244,3713689-3713733,3713959-3714015,371... 30 1.5
07_03_1566 + 27766336-27766393,27766480-27766609,27766728-277667... 29 2.6
03_02_0758 + 10954268-10954841,10955988-10957145,10957176-109572... 29 2.6
02_01_0381 - 2764331-2764342,2768966-2769907 29 2.6
01_05_0721 + 24594815-24594834,24595207-24595313,24595417-245954... 29 2.6
06_03_0337 + 19678152-19678484,19678616-19678801,19679232-196794... 29 3.5
12_02_0340 - 17725866-17725884,17726046-17726326,17726842-177269... 29 4.6
04_04_0476 - 25508952-25509004,25509245-25509326,25509453-255096... 28 6.0
03_05_0619 - 26180980-26181105,26181329-26181417,26181518-261816... 28 6.0
01_05_0722 + 24598426-24598649,24599113-24599219,24599319-245993... 28 6.0
11_06_0284 + 21909758-21913645 28 8.0
03_05_0052 - 20293197-20293310,20293938-20294024,20294133-202942... 28 8.0
>03_06_0344 -
33276366-33276548,33277044-33277169,33277254-33277322,
33277401-33277505,33277595-33277633,33277717-33278016,
33278093-33278182,33278271-33278312,33278433-33278516,
33278762-33278947,33279218-33279403,33279663-33280025
Length = 590
Score = 39.5 bits (88), Expect = 0.002
Identities = 22/58 (37%), Positives = 34/58 (58%)
Frame = +1
Query: 418 GILSDQKFTALEGTVCEPTLLGIKDMGFITRQRFKPKLYLLCWKGRDLVGAAKTGSGK 591
GIL++ F+ L V EPT I++M + + + + G+D++GAAKTGSGK
Sbjct: 91 GILTNMLFSELG--VSEPTARAIREMNYTYLTQIQARSIPHLLNGKDVMGAAKTGSGK 146
Score = 28.3 bits (60), Expect = 6.0
Identities = 15/29 (51%), Positives = 17/29 (58%)
Frame = +2
Query: 575 KLALGKTLAFLIPGYRPYIQT*NFXPRNG 661
K GKTLAFLIP + +F PRNG
Sbjct: 141 KTGSGKTLAFLIPAIE-MLHHAHFMPRNG 168
>01_06_1758 -
39681942-39682030,39682115-39682345,39682643-39682679,
39683604-39683835,39683937-39684022,39684126-39684218,
39684302-39684465,39684541-39684702,39684783-39684962,
39685079-39685515,39685614-39685669
Length = 588
Score = 33.1 bits (72), Expect = 0.21
Identities = 15/39 (38%), Positives = 23/39 (58%)
Frame = +1
Query: 484 IKDMGFITRQRFKPKLYLLCWKGRDLVGAAKTGSGKNTS 600
I GF+ + + + + KGRD++G A+TGSGK S
Sbjct: 171 IAKSGFVEPTPIQSQGWPMALKGRDMIGIAQTGSGKTLS 209
>08_01_0397 - 3509186-3510291,3510322-3512335
Length = 1039
Score = 32.3 bits (70), Expect = 0.37
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = +1
Query: 484 IKDMGFITRQRFKPKLYLLCWKGRDLVGAAKTGSGK 591
IK +GF + + + GRD +G AKTGSGK
Sbjct: 439 IKKLGFEKPMSIQAQALPIIMSGRDCIGIAKTGSGK 474
>01_01_0682 -
5244805-5244919,5246468-5246613,5246813-5246994,
5247069-5247295,5247382-5247467,5247564-5247656,
5247964-5248118,5248407-5248490,5248589-5248768,
5249587-5249828,5249927-5249982
Length = 521
Score = 32.3 bits (70), Expect = 0.37
Identities = 16/42 (38%), Positives = 24/42 (57%)
Frame = +1
Query: 466 EPTLLGIKDMGFITRQRFKPKLYLLCWKGRDLVGAAKTGSGK 591
E L I GF+ + + + + +GRDL+G A+TGSGK
Sbjct: 100 EYVLQEITKAGFVEPTPIQSQGWPMALRGRDLIGIAETGSGK 141
>08_01_0353 -
3107628-3107774,3108177-3108213,3108248-3109164,
3109210-3110952
Length = 947
Score = 31.9 bits (69), Expect = 0.49
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = +1
Query: 484 IKDMGFITRQRFKPKLYLLCWKGRDLVGAAKTGSGK 591
IK +GF + + + GRD +G AKTGSGK
Sbjct: 300 IKKLGFEKPMPIQAQALPIIMSGRDCIGIAKTGSGK 335
>11_06_0767 +
27121761-27123335,27123701-27123910,27124843-27124911,
27125387-27125656,27126027-27126377,27126480-27126757,
27126887-27128330
Length = 1398
Score = 31.1 bits (67), Expect = 0.86
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Frame = +1
Query: 439 FTALEGTVCEPTLLG-IKDMGFITRQRFKPKLYLLCWKGRDLVGAAKTGSGK 591
F E T P +L I GF+ + + + + + RD+V AKTGSGK
Sbjct: 603 FMTFEATGFPPEILQEIHAAGFLNPTPIQAQTWPVALQNRDIVAIAKTGSGK 654
>08_02_0671 -
19890187-19890295,19891186-19891320,19891551-19891917,
19892909-19893044,19894924-19894974,19895053-19895134,
19895801-19895853,19895989-19896065,19896234-19896273,
19897666-19897767,19897989-19898031,19898127-19899288,
19899902-19900271
Length = 908
Score = 30.7 bits (66), Expect = 1.1
Identities = 14/47 (29%), Positives = 22/47 (46%)
Frame = +1
Query: 460 VCEPTLLGIKDMGFITRQRFKPKLYLLCWKGRDLVGAAKTGSGKNTS 600
+CE G++ G+ + K L G D+ A+TGSGK +
Sbjct: 33 LCEEVYRGVRHKGYRVPTPIQRKAMPLILAGHDIAAMARTGSGKTAA 79
>07_03_0601 -
19872780-19873099,19873148-19873151,19874196-19874357,
19874429-19874617,19874687-19875010,19875103-19875378,
19875436-19875478,19876110-19876188,19876473-19876555,
19876708-19876782,19877324-19877490,19877960-19878370
Length = 710
Score = 30.3 bits (65), Expect = 1.5
Identities = 14/20 (70%), Positives = 17/20 (85%)
Frame = +1
Query: 532 YLLCWKGRDLVGAAKTGSGK 591
+ LC GRD++GAAKTGSGK
Sbjct: 113 HALC--GRDVLGAAKTGSGK 130
>02_05_1293 -
35520733-35520963,35521696-35521878,35522040-35522255,
35522936-35523022,35523125-35523331,35523426-35523650,
35523743-35523798,35524009-35524115,35524443-35525470
Length = 779
Score = 30.3 bits (65), Expect = 1.5
Identities = 12/43 (27%), Positives = 25/43 (58%)
Frame = +1
Query: 472 TLLGIKDMGFITRQRFKPKLYLLCWKGRDLVGAAKTGSGKNTS 600
T+ + D G++ + +C +G+D++ AKTG+GK+ +
Sbjct: 353 TVKALTDAGYVQTTVVQETALPMCLEGKDVLVKAKTGTGKSAA 395
>01_01_0509 -
3713109-3713244,3713689-3713733,3713959-3714015,
3714088-3714438,3714585-3714862,3714939-3715289,
3715378-3715647,3716035-3716103,3716194-3716304,
3716503-3716583,3716825-3716914,3717032-3717262
Length = 689
Score = 30.3 bits (65), Expect = 1.5
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Frame = +1
Query: 439 FTALEGTVCEPTLLG-IKDMGFITRQRFKPKLYLLCWKGRDLVGAAKTGSGK 591
F + T P +L ++ GF + + + + + RD+V AKTGSGK
Sbjct: 179 FMTFQSTGFPPEILREVQQAGFSAPTPIQAQSWPIALRNRDIVAVAKTGSGK 230
>07_03_1566 +
27766336-27766393,27766480-27766609,27766728-27766797,
27767134-27767196,27767741-27767815,27768035-27768154,
27768508-27768549,27768651-27768725,27768909-27769055,
27769165-27769302,27769448-27769562,27769658-27769746,
27770062-27770184
Length = 414
Score = 29.5 bits (63), Expect = 2.6
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = +1
Query: 493 MGFITRQRFKPKLYLLCWKGRDLVGAAKTGSGKNTS 600
MG+ R + ++ +GRD++G +TGSGK +
Sbjct: 1 MGWKAPTRIQAEVIPFALQGRDVIGVGQTGSGKTAA 36
>03_02_0758 +
10954268-10954841,10955988-10957145,10957176-10957216,
10957412-10957448,10957534-10957954,10958201-10958234
Length = 754
Score = 29.5 bits (63), Expect = 2.6
Identities = 11/17 (64%), Positives = 14/17 (82%)
Frame = +1
Query: 550 GRDLVGAAKTGSGKNTS 600
GRD++G AKTGSGK +
Sbjct: 256 GRDIIGIAKTGSGKTAA 272
>02_01_0381 - 2764331-2764342,2768966-2769907
Length = 317
Score = 29.5 bits (63), Expect = 2.6
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = +1
Query: 466 EPTLLGIKDMGFITRQRFKPKLYLLCWKGRDLVGAAKTGSGK 591
EP L +++ G + + + + GRD++G A TGSGK
Sbjct: 191 EPMLRKLREKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGK 232
>01_05_0721 +
24594815-24594834,24595207-24595313,24595417-24595472,
24595562-24595810,24595871-24596077,24596157-24596243,
24596331-24596426,24596500-24596715,24596908-24597090,
24597222-24597449
Length = 482
Score = 29.5 bits (63), Expect = 2.6
Identities = 13/48 (27%), Positives = 26/48 (54%)
Frame = +1
Query: 457 TVCEPTLLGIKDMGFITRQRFKPKLYLLCWKGRDLVGAAKTGSGKNTS 600
T+ +L +KD G+ + + + +G+D++ AKTG+GK +
Sbjct: 12 TISPLSLKAVKDAGYERMTQVQEATLPVILQGKDVLAKAKTGTGKTVA 59
>06_03_0337 +
19678152-19678484,19678616-19678801,19679232-19679417,
19680840-19680926,19681045-19681086,19681164-19681253,
19681399-19681503,19681797-19681835,19681914-19682018,
19682463-19682531,19682587-19682736,19683156-19683335
Length = 523
Score = 29.1 bits (62), Expect = 3.5
Identities = 22/59 (37%), Positives = 31/59 (52%)
Frame = +3
Query: 510 TEIQAKAIPPLLEGQGSCGSCQNWLWEKH*RS*YRAIDLIYKLKILXQEMGTGVIFCHP 686
TEIQA++IPPL+ G S + K AI+L+ +L+ + GTGVI P
Sbjct: 110 TEIQARSIPPLMLGSDVMASAKTGS-GKTLAFLIPAIELLCRLRFSPRN-GTGVIVLCP 166
>12_02_0340 -
17725866-17725884,17726046-17726326,17726842-17726928,
17727018-17727113,17728484-17728585,17728720-17728762,
17728834-17728952,17729348-17729444,17730153-17730214,
17730370-17730432,17730847-17730949,17731402-17731497,
17731594-17731742,17732356-17732529,17733078-17733156,
17733807-17733913,17733994-17734062,17734879-17735043,
17735206-17735703
Length = 802
Score = 28.7 bits (61), Expect = 4.6
Identities = 16/51 (31%), Positives = 24/51 (47%)
Frame = +1
Query: 448 LEGTVCEPTLLGIKDMGFITRQRFKPKLYLLCWKGRDLVGAAKTGSGKNTS 600
LE + P L + +G+ + L GRD+ G+A TGSGK +
Sbjct: 197 LELNLSRPLLRACEALGYQKPTPIQAACIPLALTGRDICGSAITGSGKTAA 247
>04_04_0476 -
25508952-25509004,25509245-25509326,25509453-25509611,
25509702-25509767,25509898-25510067,25510172-25510262,
25510331-25510410,25510887-25511003,25511092-25511218,
25511685-25511865,25511978-25512366,25512959-25513135,
25513306-25513500,25513844-25514031,25514192-25514500,
25514592-25514637
Length = 809
Score = 28.3 bits (60), Expect = 6.0
Identities = 10/15 (66%), Positives = 15/15 (100%)
Frame = +1
Query: 547 KGRDLVGAAKTGSGK 591
+G+D++GAA+TGSGK
Sbjct: 179 QGKDVIGAAETGSGK 193
>03_05_0619 -
26180980-26181105,26181329-26181417,26181518-26181629,
26181711-26181848,26182004-26182150,26182458-26182532,
26182627-26182668,26183033-26183152,26183806-26183880,
26184051-26184113,26184690-26184759,26184877-26185006,
26185097-26185328
Length = 472
Score = 28.3 bits (60), Expect = 6.0
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = +1
Query: 469 PTLLGIKD-MGFITRQRFKPKLYLLCWKGRDLVGAAKTGSGK 591
P L+ D MG+ R + + +GRDL+G +TGSGK
Sbjct: 50 PELVAACDAMGWKEPTRIQAEAIPHALEGRDLIGLGQTGSGK 91
>01_05_0722 +
24598426-24598649,24599113-24599219,24599319-24599374,
24599469-24599675,24599757-24599963,24600037-24600123,
24600167-24600208,24600209-24600304,24600406-24600621,
24600693-24600875,24601014-24601241
Length = 550
Score = 28.3 bits (60), Expect = 6.0
Identities = 13/43 (30%), Positives = 23/43 (53%)
Frame = +1
Query: 472 TLLGIKDMGFITRQRFKPKLYLLCWKGRDLVGAAKTGSGKNTS 600
+L IKD G+ + + + +G D++ AKTG+GK +
Sbjct: 85 SLKAIKDAGYEKMTQVQEATLPIILQGEDVLAKAKTGTGKTVA 127
>11_06_0284 + 21909758-21913645
Length = 1295
Score = 27.9 bits (59), Expect = 8.0
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +2
Query: 146 QKTDSNPEPEKDIEALNNEKEAKKRVGQD 232
+K + E E+ E N EKE +K VG++
Sbjct: 480 EKQEKEKEEERKEEGQNEEKEGRKEVGEE 508
>03_05_0052 -
20293197-20293310,20293938-20294024,20294133-20294270,
20295009-20295128,20295236-20295343,20296053-20296133,
20296216-20296456,20297010-20297305
Length = 394
Score = 27.9 bits (59), Expect = 8.0
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = +1
Query: 466 EPTLLGIKDMGFITRQRFKPKLYLLCWKGRDLVGAAKTGSGKNTSV 603
E L GI GF + + L GRD++ A++G+GK + +
Sbjct: 40 EDLLRGIYAYGFEKPSAIQQRAVLPIISGRDVIAQAQSGTGKTSMI 85
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,615,063
Number of Sequences: 37544
Number of extensions: 229982
Number of successful extensions: 596
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 568
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 590
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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