Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060138.seq
         (686 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_11691| Best HMM Match : No HMM Matches (HMM E-Value=.)              58   9e-09
SB_52320| Best HMM Match : DEAD (HMM E-Value=0)                        37   0.013
SB_16431| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.5  
SB_9558| Best HMM Match : DEAD (HMM E-Value=0)                         29   3.5  
SB_37351| Best HMM Match : DEAD (HMM E-Value=0)                        29   4.7  
SB_32414| Best HMM Match : Osteopontin (HMM E-Value=2.4)               28   6.2  
SB_32980| Best HMM Match : DEAD (HMM E-Value=0)                        28   8.1  
SB_32609| Best HMM Match : zf-C2H2 (HMM E-Value=0)                     28   8.1  

>SB_11691| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1448

 Score = 57.6 bits (133), Expect = 9e-09
 Identities = 30/52 (57%), Positives = 34/52 (65%)
 Frame = +1

Query: 436 KFTALEGTVCEPTLLGIKDMGFITRQRFKPKLYLLCWKGRDLVGAAKTGSGK 591
           +F+AL   V E TL GIKDMGF T    + K      KGRDL+GAAKTGSGK
Sbjct: 571 EFSALSEDVSEKTLQGIKDMGFTTMTEIQHKSIAPLLKGRDLLGAAKTGSGK 622


>SB_52320| Best HMM Match : DEAD (HMM E-Value=0)
          Length = 340

 Score = 37.1 bits (82), Expect = 0.013
 Identities = 18/44 (40%), Positives = 27/44 (61%)
 Frame = +1

Query: 460 VCEPTLLGIKDMGFITRQRFKPKLYLLCWKGRDLVGAAKTGSGK 591
           + + TL G+   GF+T    + +   +   GRD++GAAKTGSGK
Sbjct: 57  ISKRTLDGLMKAGFVTPTDIQKQGIPVALSGRDVLGAAKTGSGK 100


>SB_16431| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 790

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 13/45 (28%), Positives = 24/45 (53%)
 Frame = +1

Query: 466 EPTLLGIKDMGFITRQRFKPKLYLLCWKGRDLVGAAKTGSGKNTS 600
           E  +  I+ + +    + + +   +   GRD++G AKTGSGK  +
Sbjct: 526 EQMMASIRKLEYTQPTQIQCQALPIALSGRDIIGIAKTGSGKTAA 570


>SB_9558| Best HMM Match : DEAD (HMM E-Value=0)
          Length = 436

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = +1

Query: 547 KGRDLVGAAKTGSGKNTS 600
           +GRD +G AKTGSGK  +
Sbjct: 43  QGRDCIGCAKTGSGKTAA 60


>SB_37351| Best HMM Match : DEAD (HMM E-Value=0)
          Length = 688

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 12/47 (25%), Positives = 24/47 (51%)
 Frame = +1

Query: 460 VCEPTLLGIKDMGFITRQRFKPKLYLLCWKGRDLVGAAKTGSGKNTS 600
           + + T+  ++D G       +   +   + G D++G A+TG+GK  S
Sbjct: 80  ISQKTIDNLEDRGITYLFPIQASTFNYIYDGEDVIGQARTGTGKTLS 126


>SB_32414| Best HMM Match : Osteopontin (HMM E-Value=2.4)
          Length = 777

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 16/42 (38%), Positives = 23/42 (54%)
 Frame = -3

Query: 612 GIKNASVFPRASFGSSHKIPALPTKEV*LWLESLSRYKAHIF 487
           G+K+ S   RAS   S  +PA P  ++   L  L RY A++F
Sbjct: 497 GLKDESFLDRASTVGSESVPASPASQISQGLVLLFRY-ANVF 537


>SB_32980| Best HMM Match : DEAD (HMM E-Value=0)
          Length = 985

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = +1

Query: 469 PTLL-GIKDMGFITRQRFKPKLYLLCWKGRDLVGAAKTGSGK 591
           PTLL G+ + GF      + K   L   G DL+  AK+G+GK
Sbjct: 22  PTLLRGLNEAGFEKPSPIQLKAIPLGRCGLDLIAQAKSGTGK 63


>SB_32609| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 1741

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +3

Query: 498  LYNETEIQAKAIPPLLEGQGSCGSCQNWLWEKH*RS*YRAI 620
            L+ E   Q++++PP  EG   C  C   LW  +  S + A+
Sbjct: 1543 LHVERHEQSRSLPPRAEGAYKCERCPILLWNSNDVSRHNAL 1583


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,729,438
Number of Sequences: 59808
Number of extensions: 254553
Number of successful extensions: 632
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 596
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 631
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1781448916
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)