Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060138.seq
         (686 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF067608-1|AAC17654.2|  544|Caenorhabditis elegans Hypothetical ...    39   0.004
AC024753-1|AAF60456.1|  732|Caenorhabditis elegans Hypothetical ...    33   0.19 
Z12116-1|CAA78102.1|  402|Caenorhabditis elegans protein ( C.ele...    29   2.4  
U13876-3|AAA21170.1|  402|Caenorhabditis elegans Initiation fact...    29   2.4  
Z50044-3|CAA90355.1|  389|Caenorhabditis elegans Hypothetical pr...    29   3.1  
U13070-1|AAK67224.1|  730|Caenorhabditis elegans Hypothetical pr...    29   3.1  
AF045641-1|AAK68386.1|  970|Caenorhabditis elegans Hypothetical ...    29   4.1  
AF025458-2|AAB70978.1|  557|Caenorhabditis elegans Hypothetical ...    29   4.1  
AC006665-5|AAF39907.1|  630|Caenorhabditis elegans Hypothetical ...    29   4.1  
Z81449-4|CAB03765.1|  811|Caenorhabditis elegans Hypothetical pr...    28   5.4  
AL034488-3|CAA22456.1|  504|Caenorhabditis elegans Hypothetical ...    28   7.2  
AC024790-15|AAK84608.3|  191|Caenorhabditis elegans Hypothetical...    27   9.5  

>AF067608-1|AAC17654.2|  544|Caenorhabditis elegans Hypothetical
           protein B0511.6 protein.
          Length = 544

 Score = 38.7 bits (86), Expect = 0.004
 Identities = 20/56 (35%), Positives = 31/56 (55%)
 Frame = +1

Query: 424 LSDQKFTALEGTVCEPTLLGIKDMGFITRQRFKPKLYLLCWKGRDLVGAAKTGSGK 591
           L+   F +LEG V    L  ++ +GF T    + K      +G+D++ +AKTGSGK
Sbjct: 63  LTKTTFASLEGKVNANLLKAVQGLGFTTMTEIQAKSIDPLLEGKDVLASAKTGSGK 118


>AC024753-1|AAF60456.1|  732|Caenorhabditis elegans Hypothetical
           protein Y23H5B.6 protein.
          Length = 732

 Score = 33.1 bits (72), Expect = 0.19
 Identities = 17/44 (38%), Positives = 23/44 (52%)
 Frame = +1

Query: 472 TLLGIKDMGFITRQRFKPKLYLLCWKGRDLVGAAKTGSGKNTSV 603
           TL G+KD  +      +         G D+VGAAKTGSGK  ++
Sbjct: 87  TLEGLKDNDYTKPTEIQRDTIAYSLTGSDVVGAAKTGSGKTLAL 130


>Z12116-1|CAA78102.1|  402|Caenorhabditis elegans protein (
           C.elegans mRNA for eIF-4A homologue. ).
          Length = 402

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 13/45 (28%), Positives = 23/45 (51%)
 Frame = +1

Query: 466 EPTLLGIKDMGFITRQRFKPKLYLLCWKGRDLVGAAKTGSGKNTS 600
           E  L GI   GF      + +  + C  G+D++  A++G+GK  +
Sbjct: 38  EELLRGIYGFGFEKPSAIQKRAIVPCTTGKDVIAQAQSGTGKTAT 82


>U13876-3|AAA21170.1|  402|Caenorhabditis elegans Initiation factor
           protein 1, isoforma protein.
          Length = 402

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 13/45 (28%), Positives = 23/45 (51%)
 Frame = +1

Query: 466 EPTLLGIKDMGFITRQRFKPKLYLLCWKGRDLVGAAKTGSGKNTS 600
           E  L GI   GF      + +  + C  G+D++  A++G+GK  +
Sbjct: 38  EELLRGIYGFGFEKPSAIQKRAIVPCTTGKDVIAQAQSGTGKTAT 82


>Z50044-3|CAA90355.1|  389|Caenorhabditis elegans Hypothetical
           protein F22B5.3 protein.
          Length = 389

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = -1

Query: 536 RYSFGLNLCLVIKPISLIP 480
           RYS GL LCL++  +S IP
Sbjct: 3   RYSLGLGLCLLVASVSAIP 21


>U13070-1|AAK67224.1|  730|Caenorhabditis elegans Hypothetical
           protein F01F1.7 protein.
          Length = 730

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 11/39 (28%), Positives = 24/39 (61%)
 Frame = +1

Query: 484 IKDMGFITRQRFKPKLYLLCWKGRDLVGAAKTGSGKNTS 600
           +K++G++     + +   +  + RD++G A+TGSGK  +
Sbjct: 316 VKEIGYLEPTPIQRQAIPIGLQNRDVIGVAETGSGKTAA 354


>AF045641-1|AAK68386.1|  970|Caenorhabditis elegans Hypothetical
           protein F53H1.1 protein.
          Length = 970

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 11/14 (78%), Positives = 13/14 (92%)
 Frame = +1

Query: 550 GRDLVGAAKTGSGK 591
           GRD++G AKTGSGK
Sbjct: 341 GRDVIGIAKTGSGK 354


>AF025458-2|AAB70978.1|  557|Caenorhabditis elegans Hypothetical
           protein C01B12.5 protein.
          Length = 557

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +2

Query: 398 LDQASA*VYYQIKNSLHWKAQCANQLF*ELKIWAL 502
           LD A++ ++ QIK  L WK      ++ EL IW L
Sbjct: 7   LDVATSGLFTQIKVLLRWKGSVWKSIWSELLIWLL 41


>AC006665-5|AAF39907.1|  630|Caenorhabditis elegans Hypothetical
           protein H27M09.1 protein.
          Length = 630

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +1

Query: 487 KDMGFITRQRFKPKLYLLCWKGRDLVGAAKTGSGK 591
           K  G +T    + +   +   GRD++G A TGSGK
Sbjct: 206 KQKGIVTPTAIQIQGIPVALSGRDMIGIASTGSGK 240


>Z81449-4|CAB03765.1|  811|Caenorhabditis elegans Hypothetical
           protein C46F11.4 protein.
          Length = 811

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 11/17 (64%), Positives = 14/17 (82%)
 Frame = +1

Query: 550 GRDLVGAAKTGSGKNTS 600
           GRD++G AKTGSGK  +
Sbjct: 302 GRDVLGIAKTGSGKTAA 318


>AL034488-3|CAA22456.1|  504|Caenorhabditis elegans Hypothetical
           protein Y54G11A.3 protein.
          Length = 504

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = +1

Query: 484 IKDMGFITRQRFKPKLYLLCWKGRDLVGAAKTGSGK 591
           I+  GF      + +++ L   G+D +G ++TGSGK
Sbjct: 99  IRKNGFEKPSPIQSQMWPLLLSGQDCIGVSQTGSGK 134


>AC024790-15|AAK84608.3|  191|Caenorhabditis elegans Hypothetical
           protein Y47D7A.14 protein.
          Length = 191

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 12/40 (30%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = -1

Query: 557 SLPFQQRRYSFGLNLCLVIKPI-SLIPKRVGSHTVPSSAV 441
           +LP+ Q  Y F + L  V+ P+ S +P  +   ++P  A+
Sbjct: 48  ALPYSQATYHFAVTLSNVVSPLSSFLPFFISVRSIPVLAI 87


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,729,095
Number of Sequences: 27780
Number of extensions: 195984
Number of successful extensions: 542
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 505
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 539
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)