Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060138.seq
         (686 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       26   0.39 
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    24   1.2  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    22   6.3  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    22   6.3  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    21   8.3  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 25.8 bits (54), Expect = 0.39
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +1

Query: 550 GRDLVGAAKTGSGKNTS 600
           GRDL+  A+TGSGK  +
Sbjct: 233 GRDLMACAQTGSGKTAA 249


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
 Frame = +2

Query: 146 QKTDSNPEPEKDIEALNNEKEAK--KRVGQDGDTNGKV 253
           +K + NP+P+  + ALN  K     K V Q G T+  +
Sbjct: 26  KKRNKNPQPKNAVCALNELKSGAVYKVVDQTGPTHAPI 63


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 7/24 (29%), Positives = 14/24 (58%)
 Frame = -1

Query: 488 LIPKRVGSHTVPSSAVNF*SDSIP 417
           L+P+ +  HT P S +   + ++P
Sbjct: 653 LLPRPISCHTTPDSFIEAPNKTLP 676


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +3

Query: 372 GKKIEQRFTWIKPLLRYTIRSKIHCT 449
           GKKI   F  ++PL+ +   S ++ T
Sbjct: 240 GKKITHFFDLVRPLIAFKFHSILNRT 265


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = +1

Query: 505 TRQRFKPKLYLLCWKGRDLVGAAKTGS 585
           T   ++ KLYL C   RD++   K  +
Sbjct: 34  TSALYRLKLYLFCDYDRDIIPEQKNAT 60


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 141,246
Number of Sequences: 438
Number of extensions: 2442
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20952180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)