Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060138.seq
(686 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative non-co... 39 0.003
At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contai... 38 0.008
At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical ... 35 0.058
At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20) ... 35 0.058
At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helica... 33 0.23
At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helica... 33 0.23
At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative 32 0.41
At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong ... 31 0.54
At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical ... 31 0.54
At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical ... 31 0.54
At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical ... 31 0.54
At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong sim... 31 0.72
At1g51380.1 68414.m05780 eukaryotic translation initiation facto... 30 1.3
At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative simila... 30 1.7
At3g19760.1 68416.m02501 eukaryotic translation initiation facto... 29 2.2
At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)... 29 2.9
At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative simila... 29 2.9
At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA... 29 3.8
At3g43530.1 68416.m04621 hypothetical protein contains Pfam prof... 29 3.8
At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative simila... 28 5.0
At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative simila... 28 5.0
At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative simila... 28 5.0
At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar... 28 5.0
At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative 28 6.7
At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)... 28 6.7
At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar... 28 6.7
At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative EUKARY... 27 8.8
At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar... 27 8.8
At1g57943.1 68414.m06569 purine permease-related low similarity ... 27 8.8
>At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative
non-consensus acceptor splice site AT at exon 2; similar
to DEAD box helicase protein GB:NP_006764 from [Homo
sapiens], contains Pfam profile: PF00270 DEAD/DEAH box
helicase
Length = 568
Score = 39.1 bits (87), Expect = 0.003
Identities = 21/58 (36%), Positives = 36/58 (62%)
Frame = +1
Query: 418 GILSDQKFTALEGTVCEPTLLGIKDMGFITRQRFKPKLYLLCWKGRDLVGAAKTGSGK 591
GI+++ F +L+ + E T + IK+MGF + + +G+D++GAA+TGSGK
Sbjct: 84 GIMTNVTFDSLD--LSEQTSIAIKEMGFQYMTQIQAGSIQPLLEGKDVLGAARTGSGK 139
Score = 27.5 bits (58), Expect = 8.8
Identities = 14/25 (56%), Positives = 15/25 (60%)
Frame = +2
Query: 587 GKTLAFLIPGYRPYIQT*NFXPRNG 661
GKTLAFLIP + F PRNG
Sbjct: 138 GKTLAFLIPAVELLFKE-RFSPRNG 161
>At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contains
Pfam profiles PF00270:DEAD/DEAH box helicase and
PF00271: Helicase conserved C-terminal domain;
identical to cDNA RH27 helicase, partial GI:4033334
Length = 633
Score = 37.5 bits (83), Expect = 0.008
Identities = 20/57 (35%), Positives = 34/57 (59%)
Frame = +1
Query: 421 ILSDQKFTALEGTVCEPTLLGIKDMGFITRQRFKPKLYLLCWKGRDLVGAAKTGSGK 591
I++++ F +L ++ + T IK+MGF + + K G D++GAA+TGSGK
Sbjct: 150 IMTNKTFESL--SLSDNTYKSIKEMGFARMTQIQAKAIPPLMMGEDVLGAARTGSGK 204
Score = 27.5 bits (58), Expect = 8.8
Identities = 14/25 (56%), Positives = 15/25 (60%)
Frame = +2
Query: 587 GKTLAFLIPGYRPYIQT*NFXPRNG 661
GKTLAFLIP + F PRNG
Sbjct: 203 GKTLAFLIPAVELLYRV-KFTPRNG 226
>At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical to
RNA helicase [Arabidopsis thaliana] GI:3776023; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 563
Score = 34.7 bits (76), Expect = 0.058
Identities = 17/43 (39%), Positives = 25/43 (58%)
Frame = +1
Query: 472 TLLGIKDMGFITRQRFKPKLYLLCWKGRDLVGAAKTGSGKNTS 600
TL GI+D GF T + L +G+D++ AKTG+GK +
Sbjct: 91 TLKGIEDAGFKTMTVVQEATLPLILQGKDILAKAKTGTGKTVA 133
>At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20)
similar to ethylene-responsive RNA helicase GI:5669638
from [Lycopersicon esculentum]; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 501
Score = 34.7 bits (76), Expect = 0.058
Identities = 16/39 (41%), Positives = 23/39 (58%)
Frame = +1
Query: 484 IKDMGFITRQRFKPKLYLLCWKGRDLVGAAKTGSGKNTS 600
+K GF + + + + KGRDL+G A+TGSGK S
Sbjct: 114 VKKAGFTEPTPIQSQGWPMAMKGRDLIGIAETGSGKTLS 152
>At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 591
Score = 32.7 bits (71), Expect = 0.23
Identities = 16/39 (41%), Positives = 23/39 (58%)
Frame = +1
Query: 475 LLGIKDMGFITRQRFKPKLYLLCWKGRDLVGAAKTGSGK 591
L I +GF + + + + KGRDL+G A+TGSGK
Sbjct: 177 LEAIAKLGFTEPTPIQAQGWPMALKGRDLIGIAETGSGK 215
>At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 484
Score = 32.7 bits (71), Expect = 0.23
Identities = 16/39 (41%), Positives = 23/39 (58%)
Frame = +1
Query: 475 LLGIKDMGFITRQRFKPKLYLLCWKGRDLVGAAKTGSGK 591
L I +GF + + + + KGRDL+G A+TGSGK
Sbjct: 177 LEAIAKLGFTEPTPIQAQGWPMALKGRDLIGIAETGSGK 215
>At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative
Length = 739
Score = 31.9 bits (69), Expect = 0.41
Identities = 18/53 (33%), Positives = 28/53 (52%)
Frame = +1
Query: 433 QKFTALEGTVCEPTLLGIKDMGFITRQRFKPKLYLLCWKGRDLVGAAKTGSGK 591
+KF L + + T G+KD ++ + GRD++GAA+TGSGK
Sbjct: 71 RKFAQLP--ISDKTKRGLKDAKYVDMTDVQSAAIPHALCGRDILGAARTGSGK 121
>At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong
similarity to RNA helicase RH25 [Arabidopsis thaliana]
GI:3776023; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH31
GI:3776030
Length = 522
Score = 31.5 bits (68), Expect = 0.54
Identities = 15/43 (34%), Positives = 24/43 (55%)
Frame = +1
Query: 472 TLLGIKDMGFITRQRFKPKLYLLCWKGRDLVGAAKTGSGKNTS 600
+L IKD G+ T + + KG+D++ AKTG+GK +
Sbjct: 65 SLKAIKDAGYETMTVVQEATLPIILKGKDVLAKAKTGTGKTVA 107
>At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 31.5 bits (68), Expect = 0.54
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = +1
Query: 445 ALEGTVCEPTLLG-IKDMGFITRQRFKPKLYLLCWKGRDLVGAAKTGSGK 591
+ E T P LL + GF + + + + +GRD+V AKTGSGK
Sbjct: 159 SFEATGFPPELLREVLSAGFSAPTPIQAQSWPIAMQGRDIVAIAKTGSGK 208
>At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 31.5 bits (68), Expect = 0.54
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = +1
Query: 445 ALEGTVCEPTLLG-IKDMGFITRQRFKPKLYLLCWKGRDLVGAAKTGSGK 591
+ E T P LL + GF + + + + +GRD+V AKTGSGK
Sbjct: 159 SFEATGFPPELLREVLSAGFSAPTPIQAQSWPIAMQGRDIVAIAKTGSGK 208
>At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 618
Score = 31.5 bits (68), Expect = 0.54
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = +1
Query: 445 ALEGTVCEPTLLG-IKDMGFITRQRFKPKLYLLCWKGRDLVGAAKTGSGK 591
+ E T P LL + GF + + + + +GRD+V AKTGSGK
Sbjct: 159 SFEATGFPPELLREVLSAGFSAPTPIQAQSWPIAMQGRDIVAIAKTGSGK 208
>At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong
similarity to RNA helicase RH26 [Arabidopsis thaliana]
GI:3776025; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH26
GI:3776024
Length = 850
Score = 31.1 bits (67), Expect = 0.72
Identities = 15/43 (34%), Positives = 24/43 (55%)
Frame = +1
Query: 472 TLLGIKDMGFITRQRFKPKLYLLCWKGRDLVGAAKTGSGKNTS 600
+L IKD GF T + + +G+D++ AKTG+GK +
Sbjct: 393 SLKAIKDAGFETMTVVQEATLPIILQGKDVLAKAKTGTGKTVA 435
>At1g51380.1 68414.m05780 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative
Length = 392
Score = 30.3 bits (65), Expect = 1.3
Identities = 12/46 (26%), Positives = 25/46 (54%)
Frame = +1
Query: 466 EPTLLGIKDMGFITRQRFKPKLYLLCWKGRDLVGAAKTGSGKNTSV 603
+ L G+ D G+ + + + KGRD++ A++G+GK + +
Sbjct: 31 DKVLRGVYDYGYKKPSEIQQRALVPILKGRDVIAQAQSGTGKTSMI 76
>At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative similar
to p68 RNA helicase [Schizosaccharomyces pombe]
GI:173419
Length = 537
Score = 29.9 bits (64), Expect = 1.7
Identities = 12/14 (85%), Positives = 13/14 (92%)
Frame = +1
Query: 550 GRDLVGAAKTGSGK 591
GRDL+G AKTGSGK
Sbjct: 151 GRDLIGIAKTGSGK 164
>At3g19760.1 68416.m02501 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative / DEAD box RNA helicase,
putative contains DEAD/DEAH helicase domain; similar to
RNA helicase GB:CAA09195 from [Arabidopsis thaliana];
identical to cDNA DEAD box RNA helicase, RH2 GI:3775984
Length = 408
Score = 29.5 bits (63), Expect = 2.2
Identities = 12/46 (26%), Positives = 25/46 (54%)
Frame = +1
Query: 466 EPTLLGIKDMGFITRQRFKPKLYLLCWKGRDLVGAAKTGSGKNTSV 603
E L G+ + GF + + + +GRD++ A++G+GK + +
Sbjct: 44 EDVLRGVYEYGFEKPSAIQQRAVMPILQGRDVIAQAQSGTGKTSMI 89
>At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)
similar to RNA helicase GB:CAA09204 from [Arabidopsis
thaliana]; identical to cDNA DEAD box RNA helicase, RH13
GI:3776002
Length = 832
Score = 29.1 bits (62), Expect = 2.9
Identities = 10/16 (62%), Positives = 16/16 (100%)
Frame = +1
Query: 544 WKGRDLVGAAKTGSGK 591
++G+D++GAA+TGSGK
Sbjct: 226 YQGKDVIGAAETGSGK 241
>At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative similar
to RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 760
Score = 29.1 bits (62), Expect = 2.9
Identities = 11/17 (64%), Positives = 14/17 (82%)
Frame = +1
Query: 550 GRDLVGAAKTGSGKNTS 600
GRD++G AKTGSGK +
Sbjct: 265 GRDVIGIAKTGSGKTAA 281
>At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA
helicase DBP2 - Saccharomyces cerevisiae, PID:g5272
Length = 542
Score = 28.7 bits (61), Expect = 3.8
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = +1
Query: 469 PTLLGIKDMGFITRQRFKPKLYLLCWKGRDLVGAAKTGSGK 591
P L +KD G + + + + GRD++G A TGSGK
Sbjct: 107 PLLRMLKDKGIMHPTPIQVQGLPVVLSGRDMIGIAFTGSGK 147
>At3g43530.1 68416.m04621 hypothetical protein contains Pfam profile
PF03384: Drosophila protein of unknown function, DUF287
Length = 615
Score = 28.7 bits (61), Expect = 3.8
Identities = 14/28 (50%), Positives = 19/28 (67%)
Frame = +2
Query: 164 PEPEKDIEALNNEKEAKKRVGQDGDTNG 247
PE EKDIE ++EK+ K V QD + +G
Sbjct: 528 PESEKDIEVADSEKD--KEVPQDDEMDG 553
>At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 28.3 bits (60), Expect = 5.0
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = +1
Query: 475 LLGIKDMGFITRQRFKPKLYLLCWKGRDLVGAAKTGSGKNTS 600
L+GI + GF + + + GRD++ AK G+GK +
Sbjct: 143 LMGIYEKGFERPSPIQEESIPIALTGRDILARAKNGTGKTAA 184
>At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 28.3 bits (60), Expect = 5.0
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = +1
Query: 475 LLGIKDMGFITRQRFKPKLYLLCWKGRDLVGAAKTGSGKNTS 600
L+GI + GF + + + GRD++ AK G+GK +
Sbjct: 143 LMGIYEKGFERPSPIQEESIPIALTGRDILARAKNGTGKTAA 184
>At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative similar
to RNA helicase GB:A57514 GI:897915 from [Rattus
norvegicus]; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 989
Score = 28.3 bits (60), Expect = 5.0
Identities = 11/14 (78%), Positives = 12/14 (85%)
Frame = +1
Query: 550 GRDLVGAAKTGSGK 591
GRD +G AKTGSGK
Sbjct: 433 GRDCIGVAKTGSGK 446
>At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar to
RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 1166
Score = 28.3 bits (60), Expect = 5.0
Identities = 11/14 (78%), Positives = 12/14 (85%)
Frame = +1
Query: 550 GRDLVGAAKTGSGK 591
GRD +G AKTGSGK
Sbjct: 566 GRDCIGVAKTGSGK 579
>At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative
Length = 591
Score = 27.9 bits (59), Expect = 6.7
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +1
Query: 469 PTLLGIKDMGFITRQRFKPKLYLLCWKGRDLVGAAKTGSGK 591
P L +K+ G + + + + GRD++G A TGSGK
Sbjct: 156 PVLDTLKEKGIVQPTPIQVQGLPVILAGRDMIGIAFTGSGK 196
>At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)
identical to cDNA DEAD box RNA helicase, RH28 GI:3776026
Length = 789
Score = 27.9 bits (59), Expect = 6.7
Identities = 16/53 (30%), Positives = 24/53 (45%)
Frame = +1
Query: 442 TALEGTVCEPTLLGIKDMGFITRQRFKPKLYLLCWKGRDLVGAAKTGSGKNTS 600
T +E + P L + +G+ + L GRDL +A TGSGK +
Sbjct: 168 TFMELNLSRPLLRACETLGYKKPTPIQAACIPLALTGRDLCASAITGSGKTAA 220
>At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar to
RNA helicase RH25 [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 845
Score = 27.9 bits (59), Expect = 6.7
Identities = 14/48 (29%), Positives = 22/48 (45%)
Frame = +1
Query: 451 EGTVCEPTLLGIKDMGFITRQRFKPKLYLLCWKGRDLVGAAKTGSGKN 594
E + TL + G + R + C G+D + AKTG+GK+
Sbjct: 379 ESCISPLTLKALSASGIVKMTRVQDATLSECLDGKDALVKAKTGTGKS 426
>At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative
EUKARYOTIC INITIATION FACTOR 4A-II (EIF-4A-II), Homo
sapiens, SWISSPROT:IF42_HUMAN
Length = 472
Score = 27.5 bits (58), Expect = 8.8
Identities = 15/47 (31%), Positives = 26/47 (55%)
Frame = +1
Query: 451 EGTVCEPTLLGIKDMGFITRQRFKPKLYLLCWKGRDLVGAAKTGSGK 591
+G V E L ++++GF+ + + + GRD + A+TGSGK
Sbjct: 80 QGFVPEHILHRMEEIGFVFPTDIQREALPTLFTGRDCILHAQTGSGK 126
>At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar to
RNA helicase (RH25) [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 798
Score = 27.5 bits (58), Expect = 8.8
Identities = 14/48 (29%), Positives = 22/48 (45%)
Frame = +1
Query: 451 EGTVCEPTLLGIKDMGFITRQRFKPKLYLLCWKGRDLVGAAKTGSGKN 594
E + TL + G + R + C G+D + AKTG+GK+
Sbjct: 332 ESCISPLTLKALSASGILKMTRVQDATLSECLDGKDALVKAKTGTGKS 379
>At1g57943.1 68414.m06569 purine permease-related low similarity to
purine permease [Arabidopsis thaliana] GI:7620007;
contains Pfam profile PF03151: Domain of unknown
function, DUF250
Length = 398
Score = 27.5 bits (58), Expect = 8.8
Identities = 12/30 (40%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Frame = -1
Query: 587 PEP-VLAAPTRSLPFQQRRYSFGLNLCLVI 501
PEP + +P RSL +QR++ ++LCL +
Sbjct: 22 PEPDQILSPRRSLELKQRKWWISVSLCLFL 51
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,179,516
Number of Sequences: 28952
Number of extensions: 188757
Number of successful extensions: 573
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 543
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 567
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1457719448
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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