Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060137.seq
         (700 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1834.11c |sec18||secretory pathway protein Sec18 |Schizosacc...    29   0.64 
SPAC4G9.12 |||gluconokinase|Schizosaccharomyces pombe|chr 1|||Ma...    29   0.85 
SPBC83.08 |||AAA family ATPase Rvb2 |Schizosaccharomyces pombe|c...    28   1.5  
SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe...    27   2.0  
SPAC31G5.12c |maf1|n150|repressor of RNA polymerase III Maf1 |Sc...    27   2.6  
SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces pomb...    27   2.6  
SPCPB16A4.05c |||urease accessory protein UREG |Schizosaccharomy...    26   4.5  
SPAC1F3.10c |oct1||mitochondrial intermediate peptidase Oct1 |Sc...    26   6.0  
SPAPB8E5.09 |||AAA family ATPase Rvb1 |Schizosaccharomyces pombe...    26   6.0  
SPAC1B9.02c |sck1||serine/threonine protein kinase Sck1|Schizosa...    26   6.0  

>SPAC1834.11c |sec18||secretory pathway protein Sec18
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 792

 Score = 29.1 bits (62), Expect = 0.64
 Identities = 10/19 (52%), Positives = 17/19 (89%)
 Frame = +2

Query: 386 IIVEGPVAAGKTAFAASLA 442
           +++ GP+A+GKTA AA++A
Sbjct: 588 VLLSGPIASGKTALAATIA 606


>SPAC4G9.12 |||gluconokinase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 193

 Score = 28.7 bits (61), Expect = 0.85
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +2

Query: 383 VIIVEGPVAAGKTAFAASLADDLGMKHFPEANXDLH 490
           V +V GP  +GKT  A ++++ LG ++      DLH
Sbjct: 16  VFVVIGPAGSGKTTMAKAVSEKLGFEYI--EGDDLH 49


>SPBC83.08 |||AAA family ATPase Rvb2 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 465

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +2

Query: 380 KVIIVEGPVAAGKTAFAASLADDLG 454
           + I++ GP + GKTA A  +A  LG
Sbjct: 66  RAILMAGPPSTGKTAIAMGMAQSLG 90


>SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1465

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
 Frame = +1

Query: 511  DLRSFDDQVPXDTRTFX-HVNFNQNPNHRLGCKTFQXMMYVARYSQYIDAL 660
            DLRS    +P +++ F  ++  N +PNHRL  K    ++ +A     I  L
Sbjct: 1298 DLRSRLSIIPQESQIFEGNIRENLDPNHRLTDKKIWEVLEIASLKNCISQL 1348


>SPAC31G5.12c |maf1|n150|repressor of RNA polymerase III Maf1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 215

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = -3

Query: 464 NASYPSHRLGRLQRRSYQQLPALPRLSLCCYHQTCGSCGR 345
           NASYP H    LQ   + + P+L R+ +   + T  + GR
Sbjct: 73  NASYPDHDFSSLQPTDFYKEPSLSRV-VDSVNSTLNNIGR 111


>SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 779

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +2

Query: 386 IIVEGPVAAGKTAFAASLADDLGM 457
           +++ GP   GKT  A +LA++LG+
Sbjct: 211 VLLHGPPGCGKTMLANALANELGV 234


>SPCPB16A4.05c |||urease accessory protein UREG |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 286

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = +2

Query: 359 HR-FDDNSKVIIVEGPVAAGKTAFAASLADDLGMKH 463
           HR F   +  I V GPV +GKTA    L   LG K+
Sbjct: 79  HRDFSRRAFTIGVGGPVGSGKTALLLQLCRLLGEKY 114


>SPAC1F3.10c |oct1||mitochondrial intermediate peptidase Oct1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 762

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 11/38 (28%), Positives = 18/38 (47%)
 Frame = +1

Query: 484 FALYSSERLDLRSFDDQVPXDTRTFXHVNFNQNPNHRL 597
           F + SS  LDL SFDD +        ++    N  +++
Sbjct: 477 FTIRSSRELDLTSFDDSISLGFDDATNIRVKDNKRYQI 514


>SPAPB8E5.09 |||AAA family ATPase Rvb1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 456

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +2

Query: 380 KVIIVEGPVAAGKTAFAASLADDLGMK 460
           K ++  G    GKTA A ++A +LG K
Sbjct: 65  KGVLFAGGAGTGKTALALAIAQELGPK 91


>SPAC1B9.02c |sck1||serine/threonine protein kinase
           Sck1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 696

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +1

Query: 550 RTFXHVNFNQNPNHRLG 600
           R+F     N+NPNHRLG
Sbjct: 533 RSFVRGLLNRNPNHRLG 549


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,705,250
Number of Sequences: 5004
Number of extensions: 50089
Number of successful extensions: 127
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)