Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060137.seq
         (700 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1497 + 30585074-30586327                                         30   2.0  
07_01_0564 - 4183441-4183530,4183683-4183752,4183972-4184063,418...    29   2.7  
01_06_1273 + 35896320-35896400,35896548-35896736,35897817-358979...    29   2.7  
04_03_0153 + 11919769-11919880,11920190-11920488,11921909-119220...    28   6.2  
02_04_0264 - 21393029-21393046,21394249-21394814,21395005-21395623     28   8.2  

>06_03_1497 + 30585074-30586327
          Length = 417

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = +2

Query: 377 SKVIIVEGPVAAGKTAFAASLADDL 451
           +KVI++ GP  AGKT  A  LA  L
Sbjct: 25  NKVIVISGPTGAGKTRLALDLAKRL 49


>07_01_0564 -
           4183441-4183530,4183683-4183752,4183972-4184063,
           4184141-4184240,4184372-4184478,4184703-4184768,
           4184879-4185013,4185653-4185808,4186113-4186262,
           4186426-4186557,4187604-4187693
          Length = 395

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +2

Query: 380 KVIIVEGPVAAGKTAFAASLADDLGMK 460
           + +++ GP A GKTA A  ++ +LG K
Sbjct: 4   RALLLAGPPATGKTALALGISQELGSK 30


>01_06_1273 +
           35896320-35896400,35896548-35896736,35897817-35897948,
           35898093-35898242,35898564-35898719,35899462-35899596,
           35899706-35899771,35900016-35900122,35900258-35900357,
           35900436-35900527,35901026-35901095,35901229-35901318
          Length = 455

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +2

Query: 380 KVIIVEGPVAAGKTAFAASLADDLGMK 460
           + +++ GP A GKTA A  ++ +LG K
Sbjct: 64  RALLLAGPPATGKTALALGISQELGSK 90


>04_03_0153 +
           11919769-11919880,11920190-11920488,11921909-11922024,
           11922113-11922248,11922959-11923006,11924130-11924228,
           11924317-11924385,11924465-11924599,11924687-11924755,
           11925221-11925276,11925465-11925624,11926534-11926698,
           11927484-11927568,11927646-11927849,11928396-11928487,
           11928571-11928613,11930727-11930884,11931520-11931630,
           11931947-11932012,11933716-11933784,11934181-11934255,
           11934330-11934506,11934598-11934683,11936259-11936313,
           11936901-11936939,11938105-11938230,11938319-11938432,
           11939208-11939265,11939485-11939623,11939698-11939783,
           11939842-11940041
          Length = 1148

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = +2

Query: 317 QGLHLVAXLIDRTTHRFDDNSKVIIVEGPVAAGKTAFAASLADDLG 454
           +G +L+   I     R D     + + GP  +GKT+ A  +A  LG
Sbjct: 141 RGFYLLVKAIQELRERKDGLVVTVGIGGPTGSGKTSLAEKVASVLG 186


>02_04_0264 - 21393029-21393046,21394249-21394814,21395005-21395623
          Length = 400

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -3

Query: 392 RLSLCCYHQTCGSCGRLXAQPSVVLV 315
           R S CC    CG+CG     P+VV++
Sbjct: 353 RYSFCCSRILCGTCGCPCDPPAVVVL 378


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,525,708
Number of Sequences: 37544
Number of extensions: 334043
Number of successful extensions: 670
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 655
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 670
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)