Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060137.seq
         (700 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U21320-4|AAM54175.1|  188|Caenorhabditis elegans Hypothetical pr...    56   2e-08
U21320-3|AAA62532.1|  436|Caenorhabditis elegans Hypothetical pr...    56   2e-08
Z81042-2|CAB02793.1|  458|Caenorhabditis elegans Hypothetical pr...    29   2.4  
AL031633-16|CAA21028.1|  374|Caenorhabditis elegans Hypothetical...    29   2.4  
AF043693-4|AAB97538.1|  971|Caenorhabditis elegans Hypothetical ...    27   9.8  

>U21320-4|AAM54175.1|  188|Caenorhabditis elegans Hypothetical
           protein K04G7.4b protein.
          Length = 188

 Score = 56.0 bits (129), Expect = 2e-08
 Identities = 26/55 (47%), Positives = 32/55 (58%)
 Frame = +2

Query: 320 GLHLVAXLIDRTTHRFDDNSKVIIVEGPVAAGKTAFAASLADDLGMKHFPEANXD 484
           G + +  L D T   F  NSK+I+VEG + +GKT  A  LAD LG  HFPE   D
Sbjct: 53  GFNYIDGLKDDTRSHFHQNSKLIVVEGNIGSGKTTLAKQLADQLGFVHFPEFRMD 107


>U21320-3|AAA62532.1|  436|Caenorhabditis elegans Hypothetical
           protein K04G7.4a protein.
          Length = 436

 Score = 56.0 bits (129), Expect = 2e-08
 Identities = 26/55 (47%), Positives = 32/55 (58%)
 Frame = +2

Query: 320 GLHLVAXLIDRTTHRFDDNSKVIIVEGPVAAGKTAFAASLADDLGMKHFPEANXD 484
           G + +  L D T   F  NSK+I+VEG + +GKT  A  LAD LG  HFPE   D
Sbjct: 53  GFNYIDGLKDDTRSHFHQNSKLIVVEGNIGSGKTTLAKQLADQLGFVHFPEFRMD 107



 Score = 38.3 bits (85), Expect = 0.005
 Identities = 24/80 (30%), Positives = 37/80 (46%)
 Frame = +1

Query: 448 LGYEAFPRS*XGFALYSSERLDLRSFDDQVPXDTRTFXHVNFNQNPNHRLGCKTFQXMMY 627
           LG+  FP       L      DLR++ ++ P   R      F +NP+  L     Q  ++
Sbjct: 96  LGFVHFPEFRMDDILVDRYGNDLRNYYNKFPARYRLPDISMFYKNPSGELSA-AMQDRIF 154

Query: 628 VARYSQYIDALGHLFNTWPG 687
             R+ QY++AL H+ NT  G
Sbjct: 155 NCRFDQYLNALAHILNTGQG 174


>Z81042-2|CAB02793.1|  458|Caenorhabditis elegans Hypothetical
           protein C27H6.2 protein.
          Length = 458

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = +2

Query: 380 KVIIVEGPVAAGKTAFAASLADDLG 454
           + +++ GP A GKTA A +++ +LG
Sbjct: 83  RAVLIAGPPATGKTAIALAMSQELG 107


>AL031633-16|CAA21028.1|  374|Caenorhabditis elegans Hypothetical
           protein Y39A1A.16 protein.
          Length = 374

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = -2

Query: 261 WPAGDIPILYKRTCCYFCTLSWAD 190
           W AG +P L K    YFC  SW D
Sbjct: 283 WMAGAVPKLRKLRLNYFCEPSWVD 306


>AF043693-4|AAB97538.1|  971|Caenorhabditis elegans Hypothetical
           protein C34B2.6 protein.
          Length = 971

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +2

Query: 380 KVIIVEGPVAAGKTAFAASLADDLGMKHF 466
           K++   GP   GKT+ A S+A  L  ++F
Sbjct: 506 KILCFHGPPGVGKTSIAKSIATALNREYF 534


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,063,836
Number of Sequences: 27780
Number of extensions: 289928
Number of successful extensions: 651
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 610
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 651
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)