Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060136.seq
         (686 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q331W6 Cluster: Phage virion protein; n=1; Clostridium ...    33   4.9  
UniRef50_Q7RDE6 Cluster: Putative uncharacterized protein PY0547...    33   6.5  

>UniRef50_Q331W6 Cluster: Phage virion protein; n=1; Clostridium
           phage c-st|Rep: Phage virion protein - Clostridium
           botulinum C bacteriophage
          Length = 204

 Score = 33.5 bits (73), Expect = 4.9
 Identities = 14/36 (38%), Positives = 24/36 (66%)
 Frame = -1

Query: 383 PTNSSLENNSSKFHLYYIVYDIKESI*IVRKEILIT 276
           P N +LE   S+F  Y ++Y +K+S+ IV+ + L+T
Sbjct: 118 PLNLTLEMVKSQFQYYDVIYRLKDSVHIVKGQFLLT 153


>UniRef50_Q7RDE6 Cluster: Putative uncharacterized protein PY05476;
            n=9; Plasmodium (Vinckeia)|Rep: Putative uncharacterized
            protein PY05476 - Plasmodium yoelii yoelii
          Length = 3569

 Score = 33.1 bits (72), Expect = 6.5
 Identities = 17/52 (32%), Positives = 30/52 (57%)
 Frame = -1

Query: 383  PTNSSLENNSSKFHLYYIVYDIKESI*IVRKEILITFKWVPSHPELRAMKKL 228
            P+N  +  NSS   ++Y+  DIKE++ +V+KEI   F   P + + +   K+
Sbjct: 1885 PSNGLIPANSS--FIFYLHIDIKEAVNLVKKEISCKFSLTPFNIKTKKHSKI 1934


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 608,265,870
Number of Sequences: 1657284
Number of extensions: 11224977
Number of successful extensions: 25353
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 24671
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25349
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 53719013270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)