Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060136.seq
         (686 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1289.02c |uap2||U2 snRNP-associated protein Uap2|Schizosacch...    26   4.4  
SPAC926.06c |||leucine-rich repeat protein, unknown|Schizosaccha...    26   4.4  
SPCC18.04 |pof6||F-box protein Pof6|Schizosaccharomyces pombe|ch...    26   5.9  
SPAC227.15 |||protein phosphatase regulatory subunit Reg1 |Schiz...    26   5.9  

>SPBC1289.02c |uap2||U2 snRNP-associated protein
           Uap2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 367

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = +1

Query: 178 FKECGVINVKISNGSP 225
           FK+CGVI   I NG+P
Sbjct: 130 FKKCGVIAKNIDNGTP 145


>SPAC926.06c |||leucine-rich repeat protein,
           unknown|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 621

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 11/42 (26%), Positives = 22/42 (52%)
 Frame = -3

Query: 225 RATIGNLDIDHSALLKVPFTDFHAEFXVSLKQLWLEYRYKKD 100
           R  +GN + + + L   PFT  ++ + +++   + EY   KD
Sbjct: 444 RRLVGNTNFEEAYLSLNPFTKTYSSYRITIFNYFREYPGSKD 485


>SPCC18.04 |pof6||F-box protein Pof6|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 872

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 16/51 (31%), Positives = 26/51 (50%)
 Frame = +2

Query: 116 YSNQSCFSETXNSAWKSVNGTLRSAE*SMSRFPMVARSASSLLVIPDVKVP 268
           Y +Q   S+   S+  S    L+S++   +       S+SSLL +PD K+P
Sbjct: 90  YESQDGMSQANMSSNTSKGFHLQSSDKKYADSDRPKLSSSSLLSLPDQKIP 140


>SPAC227.15 |||protein phosphatase regulatory subunit Reg1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 873

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = +2

Query: 14  SWLKYLEQSKLSAPESLVWCWHSEVRW 94
           +W+K+  + K  +PE+L W    +V W
Sbjct: 338 TWMKHKFKLKTISPETLNWLKECDVTW 364


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,636,888
Number of Sequences: 5004
Number of extensions: 51582
Number of successful extensions: 129
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)