Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060136.seq
         (686 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0457 + 25359486-25359571,25360690-25360782,25361561-253616...    30   2.0  
01_07_0325 - 42745611-42745700,42745939-42745971,42746069-427461...    29   3.5  
01_07_0330 - 42788802-42788891,42789224-42789274,42789365-427893...    28   6.0  

>04_04_0457 +
           25359486-25359571,25360690-25360782,25361561-25361622,
           25361758-25361816,25363624-25363733,25364795-25364829,
           25365469-25365546,25365952-25366005,25366277-25366362,
           25366468-25366571,25366986-25367054,25367135-25367250,
           25367387-25367421,25367512-25367654,25367808-25367930,
           25368463-25368556
          Length = 448

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 16/62 (25%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
 Frame = +2

Query: 92  WAASFLYRYSNQSCFSE-TXNSAWKSVNGTLRS-AE*SMSRFPMVARSASSLLVIPDVKV 265
           ++ SF    ++++   E    S W+S NGT+R+    ++ R P++ ++   +L +PD   
Sbjct: 139 YSNSFFMTLTDETRVKEFKLKSMWRSPNGTIRNILNGTVFREPILCKNVPRILSVPDGAE 198

Query: 266 PI 271
           P+
Sbjct: 199 PV 200


>01_07_0325 -
           42745611-42745700,42745939-42745971,42746069-42746182,
           42746325-42746417,42746502-42746597,42746820-42746924,
           42747027-42747284,42748740-42749402
          Length = 483

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
 Frame = -1

Query: 359 NSSKFHLYYIVYDIKESI*IVRKEILITFKW--VPSHPELRAMKKLTGLPLEILTLITPH 186
           N  K+H+Y+  YD+++       E+    KW  V +    +A+K  TG P     L    
Sbjct: 313 NWDKYHMYFNTYDVEKQYVKYYGELSKKLKWGRVSNRGLYQAVKIATGFPKITARLA--- 369

Query: 185 SLKFHLQISMLN 150
            L FH  +S +N
Sbjct: 370 YLGFHEFVSSMN 381


>01_07_0330 -
           42788802-42788891,42789224-42789274,42789365-42789397,
           42789501-42789614,42789757-42789849,42789934-42790029,
           42790255-42790359,42790453-42790768,42790955-42791010,
           42791131-42791399,42791616-42791658
          Length = 421

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
 Frame = -1

Query: 359 NSSKFHLYYIVYDIKESI*IVRKEILITFKW--VPSHPELRAMKKLTGLPLEILTLITPH 186
           N  ++H+Y+  YD+++       E+    KW  V +    +A+K  TG P     L    
Sbjct: 234 NWDRYHMYFNTYDVEKQYAKYYVELSKKLKWGKVSNRGLYQAVKIATGFPKITAKLA--- 290

Query: 185 SLKFHLQISMLN 150
            L FH  +S +N
Sbjct: 291 YLGFHELVSSMN 302


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,660,841
Number of Sequences: 37544
Number of extensions: 285756
Number of successful extensions: 625
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 606
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 625
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)