Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060136.seq
         (686 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U97192-2|AAO38678.1|  622|Caenorhabditis elegans Hypothetical pr...    30   1.8  
U97192-1|AAB52434.2|  986|Caenorhabditis elegans Hypothetical pr...    30   1.8  
Z36753-9|CAA85337.1|  445|Caenorhabditis elegans Hypothetical pr...    27   9.5  

>U97192-2|AAO38678.1|  622|Caenorhabditis elegans Hypothetical
           protein C01F4.2b protein.
          Length = 622

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
 Frame = +2

Query: 47  SAPESLVWCWHSE-VRWAASFLYRYSNQSCFSETXNSAWKSVNG-TLRSAE 193
           S+  S  W + S+ + W     Y YS+ S  S + +SAWKS++  T RS +
Sbjct: 258 SSSHSEGWKYSSQKLLWKLKPKYAYSHASSTSSSTDSAWKSLDSMTWRSVD 308


>U97192-1|AAB52434.2|  986|Caenorhabditis elegans Hypothetical
           protein C01F4.2a protein.
          Length = 986

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
 Frame = +2

Query: 47  SAPESLVWCWHSE-VRWAASFLYRYSNQSCFSETXNSAWKSVNG-TLRSAE 193
           S+  S  W + S+ + W     Y YS+ S  S + +SAWKS++  T RS +
Sbjct: 258 SSSHSEGWKYSSQKLLWKLKPKYAYSHASSTSSSTDSAWKSLDSMTWRSVD 308


>Z36753-9|CAA85337.1|  445|Caenorhabditis elegans Hypothetical
           protein T09A5.11 protein.
          Length = 445

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +1

Query: 142 NXEFSMEICKWNFKECGVINVKISN 216
           N +F+  I +W  KE GV+ VK  N
Sbjct: 265 NADFATAITRWVMKESGVLRVKTVN 289


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,297,440
Number of Sequences: 27780
Number of extensions: 279322
Number of successful extensions: 621
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 603
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 621
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)