Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060136.seq
         (686 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    22   6.3  
X02007-1|CAA26038.1|   70|Apis mellifera prepromelittin protein.       21   8.3  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    21   8.3  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    21   8.3  
AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex det...    21   8.3  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        21   8.3  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        21   8.3  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        21   8.3  

>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = -2

Query: 616 ELLQYLENSNFYTLYRDSSKTDHN 545
           ELL+YL   +F  L  D  K D N
Sbjct: 510 ELLKYLRKVDFEGLSGDKFKFDKN 533


>X02007-1|CAA26038.1|   70|Apis mellifera prepromelittin protein.
          Length = 70

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 7/21 (33%), Positives = 14/21 (66%)
 Frame = +3

Query: 99  RLFYTGIPTKVASVKRRIQHG 161
           ++  TG+P  ++ +KR+ Q G
Sbjct: 50  KVLTTGLPALISWIKRKRQQG 70


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -1

Query: 251 ELRAMKKLTGLPLEILTLITPHSLKF 174
           ELR ++K+ G     LTLI P +L +
Sbjct: 15  ELRYLEKVRGPKYLPLTLIVPITLTY 40


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = +1

Query: 151 FSMEICKWNFKECGVINVKISNG 219
           +S  + ++NF    + N  ISNG
Sbjct: 22  YSWNVIEYNFPNDNIRNTLISNG 44


>AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 7/23 (30%), Positives = 16/23 (69%)
 Frame = -1

Query: 380 TNSSLENNSSKFHLYYIVYDIKE 312
           +N+++ NN+    LYY + +I++
Sbjct: 319 SNNTIHNNNYNKKLYYNIINIEQ 341


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 5/13 (38%), Positives = 10/13 (76%)
 Frame = -3

Query: 609 CNIWKIQIFILYI 571
           CNIW + + +L++
Sbjct: 5   CNIWTLAVNVLFV 17


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 5/13 (38%), Positives = 10/13 (76%)
 Frame = -3

Query: 609 CNIWKIQIFILYI 571
           CNIW + + +L++
Sbjct: 5   CNIWTLAVNVLFV 17


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 5/13 (38%), Positives = 10/13 (76%)
 Frame = -3

Query: 609 CNIWKIQIFILYI 571
           CNIW + + +L++
Sbjct: 5   CNIWTLAVNVLFV 17


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,841
Number of Sequences: 438
Number of extensions: 4213
Number of successful extensions: 11
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20952180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)