Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060136.seq
         (686 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g23950.1 68415.m02860 leucine-rich repeat family protein / pr...    32   0.31 
At4g39756.1 68417.m05630 kelch repeat-containing F-box family pr...    29   3.8  
At4g30520.1 68417.m04333 leucine-rich repeat family protein / pr...    27   8.8  
At1g79760.1 68414.m09306 expressed protein                             27   8.8  

>At2g23950.1 68415.m02860 leucine-rich repeat family protein /
           protein kinase family protein contains Pfam domains
           PF00560: Leucine Rich Repeat and PF00069: Protein kinase
           domain
          Length = 634

 Score = 32.3 bits (70), Expect = 0.31
 Identities = 16/50 (32%), Positives = 23/50 (46%)
 Frame = +1

Query: 148 EFSMEICKWNFKECGVINVKISNGSPVSFFIARNSGCEGTHLNVINISLR 297
           EFS++ C W    C   N+ I  G+P        SG  G   N+  +SL+
Sbjct: 57  EFSVDPCSWTMISCSSDNLVIGLGAPSQSLSGTLSGSIGNLTNLRQVSLQ 106


>At4g39756.1 68417.m05630 kelch repeat-containing F-box family
           protein contains F-box domain Pfam:PF00646 and Kelch
           motif Pfam:PF01344
          Length = 374

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 14/52 (26%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
 Frame = +2

Query: 107 LYRYSNQSC-FSETXNSAWKSVNGTLRSAE*SMSRFPMVARSASSLLVIPDV 259
           LYR+S QSC + +T +  W+ + G         S    VA+    +L++ ++
Sbjct: 270 LYRFSRQSCSWYDTKHKEWRDIKGLATLNRRRRSSILEVAKYGDKVLILWEI 321


>At4g30520.1 68417.m04333 leucine-rich repeat family protein /
           protein kinase family protein contains Pfam domains
           PF00560: Leucine Rich Repeat and PF00069: Protein kinase
           domain
          Length = 648

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 15/50 (30%), Positives = 22/50 (44%)
 Frame = +1

Query: 148 EFSMEICKWNFKECGVINVKISNGSPVSFFIARNSGCEGTHLNVINISLR 297
           EFS++ C W    C   N+ I  G+P        S   G   N+  +SL+
Sbjct: 60  EFSVDPCSWAMITCSPDNLVIGLGAPSQSLSGGLSESIGNLTNLRQVSLQ 109


>At1g79760.1 68414.m09306 expressed protein
          Length = 299

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 18/49 (36%), Positives = 23/49 (46%)
 Frame = -3

Query: 243 SNEEADRATIGNLDIDHSALLKVPFTDFHAEFXVSLKQLWLEYRYKKDA 97
           S EEA R  +   D  HS  L       HAEF V  K+ W+ +  + DA
Sbjct: 173 SKEEAIRMLLRGYDERHSLCLNF----CHAEFHVYSKRGWVSFSPRPDA 217


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,177,013
Number of Sequences: 28952
Number of extensions: 247688
Number of successful extensions: 515
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 512
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 514
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1457719448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)