Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060135.seq
(661 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0168 + 6094658-6096220,6096335-6096608,6096671-6096821,609... 100 9e-22
07_03_0104 + 13434954-13435145,13436220-13436288,13436386-134365... 61 9e-10
06_03_1114 + 27719099-27719252,27719340-27719570,27720508-277211... 57 1e-08
06_03_1108 - 27661916-27662812,27662889-27663529,27663613-276645... 56 3e-08
01_01_0195 + 1697447-1697691,1698150-1698808,1699754-1701570,170... 55 6e-08
07_03_0108 + 13481249-13481464,13484556-13484693,13485320-134853... 50 2e-06
01_06_1801 - 39954425-39954533,39955289-39955578,39955786-399568... 30 1.4
01_06_0524 - 30011038-30011230,30012959-30013236 30 1.4
01_03_0280 - 14546334-14546815,14546894-14547560,14550333-145517... 30 1.4
01_02_0037 + 10476208-10476876 30 1.9
02_02_0661 - 12731005-12731238,12732756-12732884,12732969-127331... 29 3.3
10_08_0849 + 21040043-21040199,21040620-21040678,21040925-210424... 29 4.3
06_01_0030 - 296681-296789,296903-297105,297348-297426,297512-29... 29 4.3
04_03_0535 - 16850704-16853001,16854055-16854115,16854228-168543... 29 4.3
11_05_0017 - 18416977-18417936 28 5.7
01_05_0503 - 22779025-22779397,22779602-22779627 28 5.7
01_01_0344 + 2751218-2751288,2751793-2751904,2751965-2752012 28 5.7
11_01_0453 + 3512645-3514246 28 7.6
07_01_0677 + 5087584-5087589,5088890-5089172,5093561-5093704,509... 28 7.6
06_03_1133 - 27886823-27887088,27887837-27888629,27888674-27889000 28 7.6
05_05_0136 - 22631260-22631325,22631735-22631821,22631898-226320... 28 7.6
04_03_0260 - 13580396-13582990 28 7.6
02_01_0727 - 5451819-5453090 28 7.6
01_01_0003 + 11774-12813,12906-13271,13359-13437,13840-13968,139... 28 7.6
>03_02_0168 +
6094658-6096220,6096335-6096608,6096671-6096821,
6097052-6097262,6097344-6097550,6097982-6098350
Length = 924
Score = 100 bits (240), Expect = 9e-22
Identities = 44/85 (51%), Positives = 59/85 (69%), Gaps = 5/85 (5%)
Frame = +3
Query: 255 AEWSFLAASVPMCLSLAIAGNSFC-----GSDVGGFFKYPEAELMTRWYQAAAFQPFFRA 419
A+W L +S+PM L+L + G +F G+D+GGFF PE +L+ RWYQ AF PFFR
Sbjct: 589 ADWDHLKSSIPMVLTLGLTGMTFSVGALTGADIGGFFGNPEPDLLVRWYQVGAFYPFFRG 648
Query: 420 HSHIETKRREPWLYPAVTTALIRDA 494
H+H +TKRREPWL+ TAL+R+A
Sbjct: 649 HAHHDTKRREPWLFGERRTALMREA 673
Score = 85.8 bits (203), Expect = 3e-17
Identities = 43/82 (52%), Positives = 52/82 (63%)
Frame = +1
Query: 10 NGPEVTMPKDCRHYKPPQDGLEGLAAYWEHRHVHNEYGLWNLRATNTGLLDRADGVYRPF 189
NGPEVTMP+D HY EHR +HN YG + AT GLL R +G RPF
Sbjct: 518 NGPEVTMPRDAVHYGDV-----------EHRELHNAYGYYFHMATADGLLKRGEGKDRPF 566
Query: 190 LLTRAVFAGTQRYSAVWTGDNT 255
+L+RA FAG+QRY A+WTGDN+
Sbjct: 567 VLSRAFFAGSQRYGAIWTGDNS 588
Score = 39.9 bits (89), Expect = 0.002
Identities = 16/29 (55%), Positives = 23/29 (79%)
Frame = +2
Query: 509 ALLDFWYTLFXEHTVDGLPVMRPLFQHYP 595
+LL ++YTLF E +V G+PVMRPL+ +P
Sbjct: 679 SLLPYYYTLFREASVTGVPVMRPLWLEFP 707
>07_03_0104 +
13434954-13435145,13436220-13436288,13436386-13436523,
13436612-13436729,13437214-13437296,13438305-13438400,
13438552-13438720,13438798-13438940,13439027-13439113,
13439197-13439382,13439956-13440123,13441028-13441148,
13441453-13441522,13441694-13441781,13441866-13442018
Length = 626
Score = 60.9 bits (141), Expect = 9e-10
Identities = 29/71 (40%), Positives = 42/71 (59%)
Frame = +1
Query: 67 GLEGLAAYWEHRHVHNEYGLWNLRATNTGLLDRADGVYRPFLLTRAVFAGTQRYSAVWTG 246
G + + H + HN YG+ R+T G+ +A+ RPF+LTRA F G+QRY+A WTG
Sbjct: 350 GDDDIGGVQNHSYYHNVYGMLMARSTYEGMA-KANTEKRPFVLTRAGFIGSQRYAATWTG 408
Query: 247 DNTRSGRSLRL 279
DN + L +
Sbjct: 409 DNLSNWEHLHM 419
Score = 55.2 bits (127), Expect = 4e-08
Identities = 25/69 (36%), Positives = 33/69 (47%)
Frame = +3
Query: 255 AEWSFLAASVPMCLSLAIAGNSFCGSDVGGFFKYPEAELMTRWYQAAAFQPFFRAHSHIE 434
+ W L SVPM L L ++G G D+GGF +L RW A PF R H+
Sbjct: 412 SNWEHLHMSVPMVLQLGLSGQPLSGPDIGGFAGNATPKLFGRWMGLGALFPFSRGHTETG 471
Query: 435 TKRREPWLY 461
+ EPW +
Sbjct: 472 SIDHEPWSF 480
>06_03_1114 +
27719099-27719252,27719340-27719570,27720508-27721148,
27721225-27722124
Length = 641
Score = 57.2 bits (132), Expect = 1e-08
Identities = 30/73 (41%), Positives = 39/73 (53%)
Frame = +3
Query: 252 YAEWSFLAASVPMCLSLAIAGNSFCGSDVGGFFKYPEAELMTRWYQAAAFQPFFRAHSHI 431
+A W L S+ LS + G G+D+ GF EL +RW Q AF PF R HS I
Sbjct: 297 FATWDDLRYSINTMLSFGLFGIPMIGADICGFGGNTTEELCSRWIQLGAFYPFSRDHSAI 356
Query: 432 ETKRREPWLYPAV 470
T RRE +L+ +V
Sbjct: 357 GTVRRELYLWESV 369
Score = 50.8 bits (116), Expect = 9e-07
Identities = 26/56 (46%), Positives = 34/56 (60%)
Frame = +1
Query: 109 HNEYGLWNLRATNTGLLDRADGVYRPFLLTRAVFAGTQRYSAVWTGDNTRSGRSLR 276
HN +G RAT+ LL D RPF+L+R+ F G+ RY+A WTGDN + LR
Sbjct: 251 HNLFGFLEARATHDALL--RDTGRRPFVLSRSTFVGSGRYTAHWTGDNFATWDDLR 304
Score = 34.3 bits (75), Expect = 0.087
Identities = 15/29 (51%), Positives = 17/29 (58%)
Frame = +2
Query: 512 LLDFWYTLFXEHTVDGLPVMRPLFQHYPG 598
LL + YTL E G P+ RPLF YPG
Sbjct: 383 LLPYLYTLMYEAHTTGAPIARPLFFSYPG 411
>06_03_1108 -
27661916-27662812,27662889-27663529,27663613-27664592,
27664854-27664934,27668582-27668634,27669294-27669308,
27670069-27670296
Length = 964
Score = 55.6 bits (128), Expect = 3e-08
Identities = 30/72 (41%), Positives = 38/72 (52%)
Frame = +3
Query: 255 AEWSFLAASVPMCLSLAIAGNSFCGSDVGGFFKYPEAELMTRWYQAAAFQPFFRAHSHIE 434
A W L S+ LS + G G+D+ GF EL +RW Q AF PF R HS I
Sbjct: 622 ATWEDLHYSINTMLSFGLFGIPMIGADICGFGGNTTEELCSRWIQLGAFYPFSRDHSAIG 681
Query: 435 TKRREPWLYPAV 470
T RRE +L+ +V
Sbjct: 682 TVRRELYLWESV 693
Score = 50.4 bits (115), Expect = 1e-06
Identities = 25/55 (45%), Positives = 33/55 (60%)
Frame = +1
Query: 109 HNEYGLWNLRATNTGLLDRADGVYRPFLLTRAVFAGTQRYSAVWTGDNTRSGRSL 273
HN +G RAT+ LL D RPF+L+R+ F G+ RY+A WTGDN + L
Sbjct: 575 HNLFGFLEARATHDALL--RDTGRRPFVLSRSTFVGSGRYTAHWTGDNAATWEDL 627
Score = 34.3 bits (75), Expect = 0.087
Identities = 15/29 (51%), Positives = 17/29 (58%)
Frame = +2
Query: 512 LLDFWYTLFXEHTVDGLPVMRPLFQHYPG 598
LL + YTL E G P+ RPLF YPG
Sbjct: 707 LLPYLYTLMYEAHTTGAPIARPLFFSYPG 735
>01_01_0195 +
1697447-1697691,1698150-1698808,1699754-1701570,
1701700-1701771
Length = 930
Score = 54.8 bits (126), Expect = 6e-08
Identities = 24/70 (34%), Positives = 38/70 (54%)
Frame = +3
Query: 261 WSFLAASVPMCLSLAIAGNSFCGSDVGGFFKYPEAELMTRWYQAAAFQPFFRAHSHIETK 440
W L S+ L+ I G G+D+ GF+ P EL RW + AF PF R H++ +
Sbjct: 577 WENLRYSISTMLNFGIFGMPMVGADICGFYPQPTEELCNRWIELGAFYPFSRDHANFASP 636
Query: 441 RREPWLYPAV 470
R+E +++ +V
Sbjct: 637 RQELYVWESV 646
Score = 44.0 bits (99), Expect = 1e-04
Identities = 24/58 (41%), Positives = 33/58 (56%)
Frame = +1
Query: 103 HVHNEYGLWNLRATNTGLLDRADGVYRPFLLTRAVFAGTQRYSAVWTGDNTRSGRSLR 276
+ H+ YG AT+ L G RPF+LTR+ F G+ Y+A WTGDN + +LR
Sbjct: 526 NAHSLYGFSQAIATHQAL-QGLQGK-RPFILTRSTFVGSGAYAAHWTGDNKGTWENLR 581
>07_03_0108 +
13481249-13481464,13484556-13484693,13485320-13485388,
13485462-13485599,13485685-13485802,13486265-13486347,
13486921-13487013,13487801-13487969,13488056-13488129,
13488448-13488633,13490009-13490101,13490469-13490534,
13490618-13490785,13491199-13491319,13492072-13492141,
13492389-13492476,13492565-13492685,13492964-13493157,
13493239-13493347,13493488-13493643,13493858-13493957,
13494115-13494288,13494549-13494694,13494796-13494860,
13495013-13495018
Length = 986
Score = 50.0 bits (114), Expect = 2e-06
Identities = 24/54 (44%), Positives = 34/54 (62%)
Frame = +1
Query: 118 YGLWNLRATNTGLLDRADGVYRPFLLTRAVFAGTQRYSAVWTGDNTRSGRSLRL 279
YG+ ++T G+ A+ RPF+LTRA F G QRY+A+WTGDN + L +
Sbjct: 368 YGMLMAKSTYEGM-KLANPTKRPFVLTRAGFIGQQRYAAMWTGDNVSNWEHLHM 420
Score = 45.2 bits (102), Expect = 5e-05
Identities = 20/56 (35%), Positives = 27/56 (48%)
Frame = +3
Query: 294 LSLAIAGNSFCGSDVGGFFKYPEAELMTRWYQAAAFQPFFRAHSHIETKRREPWLY 461
+ L ++G F G D+GGF +L RW A PF R HS + EPW +
Sbjct: 479 VDLGLSGQPFAGPDIGGFAGNATPKLFGRWMGVGALFPFSRGHSDKGSLDHEPWSF 534
>01_06_1801 - 39954425-39954533,39955289-39955578,39955786-39956838,
39956998-39957263,39957345-39957420,39957525-39957605,
39957676-39957831,39958565-39958669,39958761-39959367,
39959514-39959585,39959802-39959953,39960063-39960240,
39960642-39960745,39960822-39960953,39961036-39961132,
39961280-39961407,39961533-39961592,39962799-39962918,
39963011-39963091,39963173-39963361,39963826-39964024,
39964177-39964257,39964398-39964588,39965226-39965382,
39965986-39966119,39966266-39966334,39966434-39966481,
39966572-39966646,39967112-39967192,39967399-39967461,
39967564-39967623,39967754-39967795,39968777-39968902,
39969027-39969176
Length = 1843
Score = 30.3 bits (65), Expect = 1.4
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = +2
Query: 377 EVVPGGRVPAVLPGPLAHRDQAARALAVPGRHHRAHPGRQP 499
++VPG + PL +DQ+ RA ++ GRH R+ +P
Sbjct: 1268 KIVPGNQSA----DPLTAKDQSVRAKSIEGRHERSEAAMKP 1304
>01_06_0524 - 30011038-30011230,30012959-30013236
Length = 156
Score = 30.3 bits (65), Expect = 1.4
Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Frame = -1
Query: 511 RYLLRLASRMSAVVTAGYSQGSRRLVSM-CEWARKNGWNAAAWYHLVMSSASGYLKNPPT 335
R R+A+R +GSR+L S CE R + A++ +M Y+ +PPT
Sbjct: 16 REAARVAARQGCAYNKAVVEGSRQLQSRACEATRSAAKHGRAFHEELMERNKRYVIDPPT 75
>01_03_0280 -
14546334-14546815,14546894-14547560,14550333-14551754,
14552831-14553127
Length = 955
Score = 30.3 bits (65), Expect = 1.4
Identities = 12/18 (66%), Positives = 13/18 (72%)
Frame = +3
Query: 123 AVEPARHQHGAAGPRRRR 176
A P RH+HG A PRRRR
Sbjct: 10 AATPRRHRHGPATPRRRR 27
>01_02_0037 + 10476208-10476876
Length = 222
Score = 29.9 bits (64), Expect = 1.9
Identities = 15/27 (55%), Positives = 16/27 (59%)
Frame = +2
Query: 407 VLPGPLAHRDQAARALAVPGRHHRAHP 487
+L GP A RD AA AL G HH HP
Sbjct: 12 LLSGPAASRDGAAAALL--GHHHHHHP 36
>02_02_0661 -
12731005-12731238,12732756-12732884,12732969-12733193,
12733302-12733478,12733576-12733788
Length = 325
Score = 29.1 bits (62), Expect = 3.3
Identities = 23/76 (30%), Positives = 35/76 (46%), Gaps = 3/76 (3%)
Frame = +2
Query: 368 AHDEVVPGG---RVPAVLPGPLAHRDQAARALAVPGRHHRAHPGRQPQEIALLDFWYTLF 538
A DEV G R P+ ++ RD +AR AVPGR+H P L +
Sbjct: 5 ALDEVTDAGAFDRSPSTFRSSIS-RDSSARFPAVPGRYHLYVSYACPWASRCLAYLKLKG 63
Query: 539 XEHTVDGLPVMRPLFQ 586
+H + G ++P+F+
Sbjct: 64 LDHAI-GFTSVKPIFE 78
>10_08_0849 +
21040043-21040199,21040620-21040678,21040925-21042494,
21042583-21042710,21042793-21043033,21043160-21043710
Length = 901
Score = 28.7 bits (61), Expect = 4.3
Identities = 31/139 (22%), Positives = 50/139 (35%), Gaps = 7/139 (5%)
Frame = -1
Query: 607 PGXSGVVLEQGPHDRQPVHRVLXEQSVPEVEQRYLLRLASRMSAVVTAGYSQGSRRLVSM 428
PG S + + D+ P H L E S+P+ + AS + S ++
Sbjct: 417 PGDSHQLKDSVVEDKDPRH--LTEGSLPD-------KAASNFKNGIKPSASSKQKQQNDS 467
Query: 427 CEWARKNGWNAAAWYHLVMSSASGYLKNP------PTSEPQKLFPAIASDKHIGTEAARN 266
+ A+ +Y + LKN PT++ K + S H R+
Sbjct: 468 QSEISDHTTGASIFYEKAKKHLADMLKNTSQSASYPTAQVSKSLEGMLSQPHYNVSPPRS 527
Query: 265 DHSAYCHLSI-PQSISGCL 212
DH CH + P+ CL
Sbjct: 528 DHRGKCHNAFSPEEPEVCL 546
>06_01_0030 -
296681-296789,296903-297105,297348-297426,297512-297877,
298590-298956,299235-299373,299461-299731,299849-299958,
300567-300704
Length = 593
Score = 28.7 bits (61), Expect = 4.3
Identities = 29/91 (31%), Positives = 38/91 (41%), Gaps = 4/91 (4%)
Frame = -1
Query: 460 YSQGSRRLVSMCEWARKNGWNAAAWYHLVMSSASGYLKNPPTSEPQKLF---PAIASDKH 290
Y S R V+ W + G A Y ASG L +PP E K F A + +
Sbjct: 286 YIVASARFVNESLWTKVTGV-AILQYSNSKGKASGPLPDPPNDEYDKTFSMNQARSIRMN 344
Query: 289 IGTEAAR-NDHSAYCHLSIPQSISGCLRTRP 200
+ T AAR N ++ + SI S LR P
Sbjct: 345 VSTGAARPNPQGSFHYGSINVSQVYKLRNEP 375
>04_03_0535 - 16850704-16853001,16854055-16854115,16854228-16854323,
16854394-16854521,16855016-16855067,16855182-16855274,
16855473-16855590,16856456-16856609,16857512-16857643,
16859136-16859216,16859353-16859507,16860118-16860343,
16860423-16860507,16860593-16860689,16861785-16861949,
16862046-16862121,16863041-16863103,16863193-16863359,
16863495-16863669,16863743-16863835,16864694-16864810,
16865589-16865778,16866092-16866126
Length = 1618
Score = 28.7 bits (61), Expect = 4.3
Identities = 20/67 (29%), Positives = 33/67 (49%)
Frame = -1
Query: 514 QRYLLRLASRMSAVVTAGYSQGSRRLVSMCEWARKNGWNAAAWYHLVMSSASGYLKNPPT 335
+R ++ L S MS ++ G + R+L + R N W ++ SGY++N +
Sbjct: 1242 RRNMVTLNSMMSVLLQNGKLEEGRKLFEQIKDER----NTVTWNSMI----SGYVQNDQS 1293
Query: 334 SEPQKLF 314
SE KLF
Sbjct: 1294 SEALKLF 1300
>11_05_0017 - 18416977-18417936
Length = 319
Score = 28.3 bits (60), Expect = 5.7
Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
Frame = -3
Query: 479 RGGDGRVQPGLAPLGLDVRVGPEERLERGRLVPPRHELSFG--ILEESSDVRTAETVPGY 306
RGGDG L V + E ERGR + P+ + F +++ ++ + AE Y
Sbjct: 7 RGGDGVAGVQLQEFAYFVVIDLEATCERGRRIYPQEIIEFASVVVDGATGEQLAEAFRAY 66
Query: 305 CQ*QAHR 285
+ HR
Sbjct: 67 VRPLHHR 73
>01_05_0503 - 22779025-22779397,22779602-22779627
Length = 132
Score = 28.3 bits (60), Expect = 5.7
Identities = 13/48 (27%), Positives = 25/48 (52%)
Frame = -2
Query: 330 NRRNCSRLLPVTSTSARKPQGTTTPRIVTCPYRRVSLGACEHGPREQE 187
N ++ R+ + + S KP+ + + +R + +GA + PREQE
Sbjct: 65 NSKDGIRMAAMENLSNLKPEPAASKQFEERRHRSIDVGALNYDPREQE 112
>01_01_0344 + 2751218-2751288,2751793-2751904,2751965-2752012
Length = 76
Score = 28.3 bits (60), Expect = 5.7
Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Frame = -1
Query: 466 AGYSQGSRRL-VSMCEWARKNGWNAAAWYHLVMSSASGYLKNPPTSEPQKLFPAIAS 299
AG + G RRL +S+ W GW +W+ ++ +GY E LF A+
Sbjct: 2 AGNASGVRRLYLSLYNWIVFIGWVQVSWFMILALLKNGYEAVYAAVEQHLLFAQTAA 58
>11_01_0453 + 3512645-3514246
Length = 533
Score = 27.9 bits (59), Expect = 7.6
Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Frame = +1
Query: 130 NLRATNTGLLDRADGVYRPFLL-TRAVFAGTQRYSAVWTGDNTRSGRSLRLPCRCAC 297
N+ T L+ DG+ R + +R+V G +S+ G RS SL C C C
Sbjct: 232 NVEVWTTNLMLVGDGIGRTVITGSRSVRGGYTTFSSATFG-TPRSSLSLLASCECEC 287
>07_01_0677 +
5087584-5087589,5088890-5089172,5093561-5093704,
5094167-5095269
Length = 511
Score = 27.9 bits (59), Expect = 7.6
Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = +2
Query: 458 VPGRHHRA-HPGRQPQEIALLDFWYTLFXEHTVDG 559
VPG HHR H GR+ I F +T+ E T G
Sbjct: 477 VPGDHHRRLHSGRRDTHIREGGFLHTVCSEDTATG 511
>06_03_1133 - 27886823-27887088,27887837-27888629,27888674-27889000
Length = 461
Score = 27.9 bits (59), Expect = 7.6
Identities = 17/66 (25%), Positives = 26/66 (39%)
Frame = +2
Query: 392 GRVPAVLPGPLAHRDQAARALAVPGRHHRAHPGRQPQEIALLDFWYTLFXEHTVDGLPVM 571
G P +PG + A A G PG P + D +TL + + LP++
Sbjct: 394 GIAPGSIPGEWFNPGGVGSAAAAAGGSSAPSPG--PSSVVTTDDDFTLEMQQIMSSLPLL 451
Query: 572 RPLFQH 589
+P H
Sbjct: 452 QPEEHH 457
>05_05_0136 -
22631260-22631325,22631735-22631821,22631898-22632026,
22632122-22632190,22632271-22632351,22632598-22632702,
22632786-22633016,22633098-22634272,22634391-22634457,
22636705-22637778,22638119-22638274,22638827-22638985,
22639062-22639220,22639306-22639422,22639502-22639612,
22639690-22640358
Length = 1484
Score = 27.9 bits (59), Expect = 7.6
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = +3
Query: 258 EWSFLAASVPMCLSLAIAGNSFCGSDVGGFF 350
E + +AA +C +L SFCG DVGG+F
Sbjct: 123 EGAVVAALTELCEAL-----SFCGEDVGGYF 148
>04_03_0260 - 13580396-13582990
Length = 864
Score = 27.9 bits (59), Expect = 7.6
Identities = 17/46 (36%), Positives = 23/46 (50%)
Frame = +3
Query: 261 WSFLAASVPMCLSLAIAGNSFCGSDVGGFFKYPEAELMTRWYQAAA 398
+ +AA+V + L LA A + V + YP A L TRW AA
Sbjct: 9 FDIVAAAVVVVLMLATAAPAI---SVQQLYDYPTANLSTRWVNNAA 51
>02_01_0727 - 5451819-5453090
Length = 423
Score = 27.9 bits (59), Expect = 7.6
Identities = 19/46 (41%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = +1
Query: 154 LLDRADGVYRPFLLTRAVFAGTQRYSAVWTGDNTRS-GRSLRLPCR 288
+ DRAD P R AGT R + TGD R+ SL LP R
Sbjct: 169 IADRADPAVGPPPEVRLTGAGTDRDVLLRTGDRLRAFSSSLNLPFR 214
>01_01_0003 +
11774-12813,12906-13271,13359-13437,13840-13968,
13969-14171,14266-14359
Length = 636
Score = 27.9 bits (59), Expect = 7.6
Identities = 25/88 (28%), Positives = 38/88 (43%), Gaps = 7/88 (7%)
Frame = +1
Query: 115 EYGLWNLRATNTGLLDRADGVYRPFLLTRAVFAGT----QRYSAVWT---GDNTRSGRSL 273
+YGLW + G ++ DGV R + T A + ++Y + SG +
Sbjct: 471 DYGLWT--DNSRGTYNKWDGVARSTIQTTAFYLEKTFEFRKYCLKYNLLMNSIQYSGTAF 528
Query: 274 RLPCRCACHWQ*PGTVSAVLTSEDSSSI 357
L C CA PG +AVL D++ I
Sbjct: 529 SLTCLCARLQVFPGAWTAVLVFLDNAGI 556
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,182,217
Number of Sequences: 37544
Number of extensions: 459103
Number of successful extensions: 1930
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 1831
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1927
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1655832080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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