Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060135.seq
(661 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_13633| Best HMM Match : Glyco_hydro_31 (HMM E-Value=0) 117 1e-26
SB_27817| Best HMM Match : Glyco_hydro_31 (HMM E-Value=0) 46 4e-05
SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.63
SB_28911| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.9
SB_29635| Best HMM Match : E-MAP-115 (HMM E-Value=1.2) 29 2.5
SB_46935| Best HMM Match : Merozoite_SPAM (HMM E-Value=1.8) 29 3.4
SB_36777| Best HMM Match : VWA (HMM E-Value=0) 29 4.4
SB_24958| Best HMM Match : S-methyl_trans (HMM E-Value=1.6e-40) 29 4.4
SB_17635| Best HMM Match : CUB (HMM E-Value=0) 28 7.7
>SB_13633| Best HMM Match : Glyco_hydro_31 (HMM E-Value=0)
Length = 663
Score = 117 bits (281), Expect = 1e-26
Identities = 51/82 (62%), Positives = 60/82 (73%)
Frame = +3
Query: 255 AEWSFLAASVPMCLSLAIAGNSFCGSDVGGFFKYPEAELMTRWYQAAAFQPFFRAHSHIE 434
AEWS L AS+PM LSL + G F G+DVGGFFK PE EL+ RWYQ F PF RAH+H++
Sbjct: 541 AEWSHLKASIPMILSLGVTGLPFAGADVGGFFKNPEPELLARWYQTGVFTPFLRAHAHLD 600
Query: 435 TKRREPWLYPAVTTALIRDANR 500
TKRREPWL+ V +IRDA R
Sbjct: 601 TKRREPWLFDDVYKNVIRDALR 622
Score = 89.4 bits (212), Expect = 2e-18
Identities = 43/81 (53%), Positives = 53/81 (65%)
Frame = +1
Query: 10 NGPEVTMPKDCRHYKPPQDGLEGLAAYWEHRHVHNEYGLWNLRATNTGLLDRADGVYRPF 189
+GPE+TM KD HY WEHR VHN YG++ +ATN GL+ R+ G RPF
Sbjct: 470 HGPEITMHKDTIHYGD-----------WEHRDVHNIYGMYFHKATNLGLIQRSGGKDRPF 518
Query: 190 LLTRAVFAGTQRYSAVWTGDN 252
+L+RA FAGTQRY +WTGDN
Sbjct: 519 VLSRAFFAGTQRYGPIWTGDN 539
Score = 31.1 bits (67), Expect = 0.83
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +2
Query: 509 ALLDFWYTLFXEHTVDGLPVMR 574
ALL WYTLF + DG P++R
Sbjct: 626 ALLPLWYTLFFHASQDGTPIIR 647
>SB_27817| Best HMM Match : Glyco_hydro_31 (HMM E-Value=0)
Length = 388
Score = 45.6 bits (103), Expect = 4e-05
Identities = 22/57 (38%), Positives = 29/57 (50%)
Frame = +3
Query: 255 AEWSFLAASVPMCLSLAIAGNSFCGSDVGGFFKYPEAELMTRWYQAAAFQPFFRAHS 425
A W + SVP L++ + G G+D+ GF EL RW Q AF PF R H+
Sbjct: 230 ATWESMYLSVPGILNMNMFGIPLVGADICGFLGNTNYELCARWTQLGAFYPFSRNHN 286
>SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 6489
Score = 31.5 bits (68), Expect = 0.63
Identities = 17/46 (36%), Positives = 27/46 (58%)
Frame = -3
Query: 410 ERLERGRLVPPRHELSFGILEESSDVRTAETVPGYCQ*QAHRHGSR 273
+ L++GR RH S GI ++ +D ++ T P ++HRHGSR
Sbjct: 5241 KHLKKGRSSRHRHHNSEGIGDDDTDNTSSSTAPT----RSHRHGSR 5282
>SB_28911| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 710
Score = 29.9 bits (64), Expect = 1.9
Identities = 16/41 (39%), Positives = 18/41 (43%)
Frame = +3
Query: 285 PMCLSLAIAGNSFCGSDVGGFFKYPEAELMTRWYQAAAFQP 407
P L I GN + F P+ EL RW QAA F P
Sbjct: 537 PFVLPDMIGGNGAQLNSNSDSFNKPDNELYVRWMQAAVFLP 577
>SB_29635| Best HMM Match : E-MAP-115 (HMM E-Value=1.2)
Length = 2658
Score = 29.5 bits (63), Expect = 2.5
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = -1
Query: 379 LVMSSASGYLKNPPTSEPQKLFPAIASDKHIGTEAAR 269
L + S Y PP ++ + L P + ++HI +EAA+
Sbjct: 964 LYLPSPPLYCPQPPNTQTEFLLPRVYQERHIRSEAAK 1000
>SB_46935| Best HMM Match : Merozoite_SPAM (HMM E-Value=1.8)
Length = 625
Score = 29.1 bits (62), Expect = 3.4
Identities = 15/44 (34%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Frame = -1
Query: 352 LKNPPTSEPQKLFPAIASDKHIGTEAARNDHSAYCHLS--IPQS 227
+K+ P ++ ++ A+ + H+ +EA+RND HLS IPQ+
Sbjct: 171 IKSAPPTQLRRQQAALEAQNHLISEASRNDVQIDVHLSPDIPQT 214
>SB_36777| Best HMM Match : VWA (HMM E-Value=0)
Length = 1303
Score = 28.7 bits (61), Expect = 4.4
Identities = 12/32 (37%), Positives = 14/32 (43%)
Frame = +2
Query: 398 VPAVLPGPLAHRDQAARALAVPGRHHRAHPGR 493
VP P P ++PGRHH H GR
Sbjct: 1266 VPQPAPAPAPAPPPMREMRSIPGRHHAQHHGR 1297
>SB_24958| Best HMM Match : S-methyl_trans (HMM E-Value=1.6e-40)
Length = 560
Score = 28.7 bits (61), Expect = 4.4
Identities = 11/38 (28%), Positives = 15/38 (39%)
Frame = -1
Query: 436 VSMCEWARKNGWNAAAWYHLVMSSASGYLKNPPTSEPQ 323
V +CEW + W W H S + Y + P Q
Sbjct: 60 VCLCEWVPYSTWTLEGWTHKERSKPTSYSQVKPKKTEQ 97
>SB_17635| Best HMM Match : CUB (HMM E-Value=0)
Length = 630
Score = 27.9 bits (59), Expect = 7.7
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = -1
Query: 97 APSKPPAPLDHPGAACSGDSP 35
+P+ PP P G+ACS +SP
Sbjct: 522 SPASPPPPYQVSGSACSTESP 542
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,672,727
Number of Sequences: 59808
Number of extensions: 472757
Number of successful extensions: 1662
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1508
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1660
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1693527500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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