Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060134.seq
(685 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0373 + 28374298-28374380,28375126-28375303,28375975-283760... 79 3e-15
05_06_0262 - 26746180-26746278,26746371-26746493,26746584-267467... 77 1e-14
01_06_0412 + 29159918-29160046,29160148-29160297,29160385-291604... 77 2e-14
07_03_1297 + 25587445-25587502,25587646-25587740,25588426-255886... 75 4e-14
05_04_0141 - 18364065-18364176,18364722-18364948,18365183-183653... 55 5e-08
03_06_0198 - 32299480-32299643,32300084-32300126,32300843-323009... 32 0.37
02_05_0128 - 26059348-26059437,26059553-26059759 31 0.85
04_03_0243 - 13271384-13272865,13272987-13273248,13274617-13276067 30 2.0
>02_05_0373 +
28374298-28374380,28375126-28375303,28375975-28376065,
28376162-28376256,28376379-28376468,28376789-28376837,
28376941-28377079,28377224-28377340,28377437-28377527,
28377604-28377746,28378009-28378123,28378439-28378483,
28378565-28378645
Length = 438
Score = 79.0 bits (186), Expect = 3e-15
Identities = 42/104 (40%), Positives = 60/104 (57%), Gaps = 1/104 (0%)
Frame = +2
Query: 281 PVTNIARTSFFHIKRANIWLAAVTKQNVNAAMVFEFLLKIXDVMQSYFG-KISEEXXXNN 457
PV I SF +++ +N+++ V N N A F+F+++ + +SYFG E+ NN
Sbjct: 49 PVRQIGGCSFLYMRISNVYIVIVVSSNANVACAFKFVVEAVALFKSYFGGAFDEDAIRNN 108
Query: 458 FVLIYELLDEILDFGYPRILILGAXRHSSLQQGHQVXLPRXDKP 589
FVLIYELLDEI+DFGYP+ L + Q+G V P KP
Sbjct: 109 FVLIYELLDEIMDFGYPQNLSPEILKLYITQEG--VRSPFSSKP 150
Score = 46.8 bits (106), Expect = 2e-05
Identities = 18/38 (47%), Positives = 28/38 (73%)
Frame = +3
Query: 141 PTMIGGLFVYNHKGEVLISRVYRDDIGRNAVDAFRVNV 254
P ++ N +G+VLI+R+YRDD+G N VDAFR+++
Sbjct: 2 PVAASAIYFLNLRGDVLINRLYRDDVGGNMVDAFRMHI 39
>05_06_0262 -
26746180-26746278,26746371-26746493,26746584-26746725,
26746824-26746921,26747012-26747108,26747215-26747322,
26747900-26748003,26748170-26748268,26748373-26748435,
26748538-26748687,26748769-26748900
Length = 404
Score = 77.4 bits (182), Expect = 1e-14
Identities = 35/79 (44%), Positives = 54/79 (68%), Gaps = 1/79 (1%)
Frame = +2
Query: 278 SPVTNI-ARTSFFHIKRANIWLAAVTKQNVNAAMVFEFLLKIXDVMQSYFGKISEEXXXN 454
SPV + A S+ I+ N++L ++QN NAA + FL ++ DV + YF ++ EE +
Sbjct: 51 SPVVHDDAGVSYMFIQHNNVFLLTASRQNCNAASILLFLHRVVDVFKHYFEELEEESLRD 110
Query: 455 NFVLIYELLDEILDFGYPR 511
NFV++YELLDE++DFGYP+
Sbjct: 111 NFVVVYELLDEMMDFGYPQ 129
>01_06_0412 +
29159918-29160046,29160148-29160297,29160385-29160447,
29160540-29160716,29160796-29160899,29162142-29162249,
29162336-29162432,29162540-29162637,29162718-29162859,
29162941-29163063,29163161-29163259
Length = 429
Score = 76.6 bits (180), Expect = 2e-14
Identities = 34/82 (41%), Positives = 55/82 (67%), Gaps = 1/82 (1%)
Frame = +2
Query: 269 QXRSPVT-NIARTSFFHIKRANIWLAAVTKQNVNAAMVFEFLLKIXDVMQSYFGKISEEX 445
+ SPV + A ++ I+ N++L ++QN NAA + FL ++ DV + YF ++ EE
Sbjct: 47 EAHSPVVYDDAGVTYMFIQHNNVFLLTASRQNCNAASILLFLHRVVDVFKHYFEELEEES 106
Query: 446 XXNNFVLIYELLDEILDFGYPR 511
+NFV++YELLDE++DFGYP+
Sbjct: 107 LRDNFVVVYELLDEMMDFGYPQ 128
>07_03_1297 +
25587445-25587502,25587646-25587740,25588426-25588629,
25588843-25588959,25589084-25589212,25589591-25589717,
25590174-25590277,25590369-25590473,25590969-25591190,
25591869-25591967
Length = 419
Score = 75.4 bits (177), Expect = 4e-14
Identities = 30/77 (38%), Positives = 50/77 (64%)
Frame = +2
Query: 281 PVTNIARTSFFHIKRANIWLAAVTKQNVNAAMVFEFLLKIXDVMQSYFGKISEEXXXNNF 460
PV N+ ++ H+K A ++ T NV+ +++ E L +I V + Y G ++E+ NF
Sbjct: 49 PVFNVDGVNYIHVKVAGLFFVVTTMVNVSPSLLLELLQRIARVTKDYLGVLNEDSLRKNF 108
Query: 461 VLIYELLDEILDFGYPR 511
+L+YELLDE++DFGYP+
Sbjct: 109 ILVYELLDEVIDFGYPQ 125
>05_04_0141 -
18364065-18364176,18364722-18364948,18365183-18365390,
18365497-18365706,18366078-18366180,18366214-18366325,
18367061-18367204,18367835-18367936,18368081-18368186,
18368301-18368335
Length = 452
Score = 55.2 bits (127), Expect = 5e-08
Identities = 21/50 (42%), Positives = 36/50 (72%)
Frame = +2
Query: 359 NVNAAMVFEFLLKIXDVMQSYFGKISEEXXXNNFVLIYELLDEILDFGYP 508
+VN F+FL ++ DV+ Y G ++E+ +NFVL+Y++LDE++D G+P
Sbjct: 91 SVNMICDFQFLSRVADVLTDYLGDLNEDIIKDNFVLVYQILDEMMDNGFP 140
>03_06_0198 -
32299480-32299643,32300084-32300126,32300843-32300929,
32301063-32301098,32301187-32301295,32301408-32301499,
32302029-32302115,32303887-32304222
Length = 317
Score = 32.3 bits (70), Expect = 0.37
Identities = 18/59 (30%), Positives = 26/59 (44%)
Frame = +2
Query: 326 ANIWLAAVTKQNVNAAMVFEFLLKIXDVMQSYFGKISEEXXXNNFVLIYELLDEILDFG 502
A+++ N V E + +V+ YFG + E NF Y +LDEIL G
Sbjct: 174 ASLYFCMCIDAEDNELEVLEIIHHFVEVLDRYFGSVCELDLIFNFHKAYYILDEILIAG 232
>02_05_0128 - 26059348-26059437,26059553-26059759
Length = 98
Score = 31.1 bits (67), Expect = 0.85
Identities = 17/48 (35%), Positives = 25/48 (52%)
Frame = +3
Query: 123 KECEASPTMIGGLFVYNHKGEVLISRVYRDDIGRNAVDAFRVNVSMLA 266
KE E +GGL + E I DD+G++ V++FR V +LA
Sbjct: 27 KELEWRKAQLGGLIRMITEEEDAIFDALHDDLGKHRVESFRDEVGVLA 74
>04_03_0243 - 13271384-13272865,13272987-13273248,13274617-13276067
Length = 1064
Score = 29.9 bits (64), Expect = 2.0
Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = -3
Query: 269 AGEHGHIHSE-CVHSITTNIISVDSRDQHLAFMVINEQ 159
+GEHGH H + SI T ++++D D H A + E+
Sbjct: 943 SGEHGHSHHRLLLESIATRVVTLDG-DHHGAAAAVRER 979
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,721,026
Number of Sequences: 37544
Number of extensions: 343701
Number of successful extensions: 685
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 670
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 684
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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