Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060134.seq
         (685 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_24749| Best HMM Match : Adap_comp_sub (HMM E-Value=2.24208e-44)    145   3e-35
SB_19443| Best HMM Match : Adap_comp_sub (HMM E-Value=2.2e-20)         73   3e-13
SB_32450| Best HMM Match : No HMM Matches (HMM E-Value=.)              43   3e-04
SB_16704| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.66 
SB_59294| Best HMM Match : PI3_PI4_kinase (HMM E-Value=2.20004e-41)    31   0.87 

>SB_24749| Best HMM Match : Adap_comp_sub (HMM E-Value=2.24208e-44)
          Length = 331

 Score =  145 bits (351), Expect = 3e-35
 Identities = 71/121 (58%), Positives = 89/121 (73%)
 Frame = +2

Query: 254 VHARQQXRSPVTNIARTSFFHIKRANIWLAAVTKQNVNAAMVFEFLLKIXDVMQSYFGKI 433
           +HAR Q RSPVTNIARTSFFHI++ N+W+AAVT+QNVNAAMVFEFL +  D+M SYFGK+
Sbjct: 37  IHARGQIRSPVTNIARTSFFHIRQGNVWIAAVTRQNVNAAMVFEFLFRTVDIMMSYFGKV 96

Query: 434 SEEXXXNNFVLIYELLDEILDFGYPRILILGAXRHSSLQQGHQVXLPRXDKPQINFXKLT 613
           +EE   NNFVLIYELLDEI D+GYP+       +    QQG +    R ++ QI   ++T
Sbjct: 97  TEEGIKNNFVLIYELLDEIADYGYPQKTDTAILKTFITQQGVKTQ-TREEQAQIT-SQVT 154

Query: 614 G 616
           G
Sbjct: 155 G 155



 Score = 74.9 bits (176), Expect = 5e-14
 Identities = 33/36 (91%), Positives = 34/36 (94%)
 Frame = +3

Query: 147 MIGGLFVYNHKGEVLISRVYRDDIGRNAVDAFRVNV 254
           MIGG F+YNHKGEVLISRVYRDDIGRN VDAFRVNV
Sbjct: 1   MIGGFFIYNHKGEVLISRVYRDDIGRNTVDAFRVNV 36


>SB_19443| Best HMM Match : Adap_comp_sub (HMM E-Value=2.2e-20)
          Length = 216

 Score = 72.5 bits (170), Expect = 3e-13
 Identities = 32/86 (37%), Positives = 51/86 (59%)
 Frame = +2

Query: 338 LAAVTKQNVNAAMVFEFLLKIXDVMQSYFGKISEEXXXNNFVLIYELLDEILDFGYPRIL 517
           +   TK+N N A++F FL ++  V   YF ++ EE   +NFV+IYEL+DE++DFGYP+  
Sbjct: 12  VVCTTKKNANVALIFVFLHRMVHVFIDYFKELEEESIRDNFVIIYELMDELVDFGYPQFT 71

Query: 518 ILGAXRHSSLQQGHQVXLPRXDKPQI 595
                +    Q+GH++ L     P +
Sbjct: 72  ETKILQEYITQEGHKLELAPKPPPAL 97


>SB_32450| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 570

 Score = 42.7 bits (96), Expect = 3e-04
 Identities = 19/36 (52%), Positives = 25/36 (69%)
 Frame = +2

Query: 398 IXDVMQSYFGKISEEXXXNNFVLIYELLDEILDFGY 505
           + ++ + Y G I+EE    N  LIYELLDE+LDFGY
Sbjct: 18  VCNLCKDYCGIINEEAIKCNLPLIYELLDEVLDFGY 53


>SB_16704| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 988

 Score = 31.5 bits (68), Expect = 0.66
 Identities = 17/54 (31%), Positives = 25/54 (46%)
 Frame = -3

Query: 587 ACPXLGXRLDAPAGVMNVXRPPVSEF*GNQSPRSHQATHRSEQSYSXXXLQKSC 426
           +CP  G R+ A  G+M V      E+   Q+  S   +  SE+ Y+    Q SC
Sbjct: 424 SCPTRGIRIHAGTGIMPVSTISEGEYAYTQAQASCPVSTISEEEYAYTQAQASC 477


>SB_59294| Best HMM Match : PI3_PI4_kinase (HMM E-Value=2.20004e-41)
          Length = 851

 Score = 31.1 bits (67), Expect = 0.87
 Identities = 14/31 (45%), Positives = 22/31 (70%)
 Frame = -1

Query: 523 QYQNSRVTKVQDLIKQLIDQNKVILXVLFRN 431
           Q++N+ V + QDLIKQL ++ ++ L V F N
Sbjct: 135 QHENTEVLRCQDLIKQLAEKYELPLKVGFNN 165


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,924,440
Number of Sequences: 59808
Number of extensions: 398248
Number of successful extensions: 1430
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1394
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1430
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1769412099
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)